Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0577 ATGATGTCCCCTGATCCAAATTTCCTTCATTCCACCCTTGGCTTATCCCAGATTCCCAGATGGAACATCTTCTTCCCCTGCAACTCCACCAAATCCCAAACCCACCATTTTTCCTCCCTCACCCATTCGGGTCGCTCCGAAATCTTCCGGGTTTCCGGCCCGGAAACCCGGTCCCAAGTCGGGTTTCCGTTCGCAAAACGGGTTGGGTCTTCGACATCCATTCTCCCCAGCGGAAGCTGGTGGGCCTTGCCGGAGCTCCGGGAAGACGGCGCGGAGCCGACGGCGGCGATGCTCGCTCTCCGGCGAATGTGGGAGTTGGTCGCCGATGAGAGACTGGTCGCGTTTGTGGCGGCTGGGTCCCTTGTAATCGCTGCTCTTTCAGAAATCACCATGCCGAGTATATTGGCTGCATCAATATTTTCGGCACAGAGTGGTGAGACTGTGGCATTCTCTAGGAATGCACTGTTTTTGCTTGTTCTGTGTTTAACTTCAGGGATATGCAGTGGTCTGCGAAGCGGCTGCTTTGGAATTTTGAATGTAACCTTGGACATCTCCTATTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGACTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGATCTTCAGCTGATATTACGCAACTCTTGTCAGGGAACTGGAGCAATAATTAATTTGATGGCTTTATCTTGGCCTCTGGCATTATCTGCCTTGGTGATTTGTTCTATTTTATCTGCAATTTTCCTGGTTTATGGCCAGTATCAAAGAAAGGCAGCAAAGTTAATCCAAGATTTCACAGCTTGTGCCAATGACGTTGCTCAGGAGACACTTTCTTCAATAAGAATTGTCCGAGCTTATGGAACAGGGAAAAAAGAATTTGGAAGGTACAAGCAATTGCTACAGAGCTTAGCATTTATAAACGTTCGAGAGAGTGTGGCTTCTGGGTTCTGGAACCTGATCTTTAACACCTTATACCGTTCAACTCAGATATTTGCAGTGGTGTTAGTAGGTATGTCTGTTCTCAGATGTCACGTAACTGTGGAACAACTTACCAAGTATGTACTATACTGCGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTAACATCATTACTGCAGTCCATTGGAGCATCTGAACAAATTTTCCAACTGATGAATCTTTTGCCCAGTGACCAATTCTTAGCCAAAGGAGTGAAGTTGGAGAGGTTAGTGGGGCATATTCAGTTTGCAAATGTATCATTTCATTATCCTGCAAGGAGTATGATGCCAGTTCTAGAATGCTTGAAATTCTCCATAGAAGCAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTACTTAACCTTCTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATCGATGGGTTTCCTCTTAACGAATTGGATATCAGGTGGCTGCGGGAGCACATTGGATATGTTGCACAGGAACCCCATCTCTTTCACATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCACGAACATAAAACAAGCAGATATTGAACGAGCAGCGAAAAAGGCCAATGCCCATGACTTTATTTCTTCACTTCCTAATGGATATGAAACCCTTGTTGATGACAATGCACTTAGTGGTGGACAAAAGCAGCGAATTGCTATCGCCAGAGCCATTCTTAGGGACCCTGTTATTATGATACTTGATGAAGCAACCAGTGCTCTAGATTCCGAGAGTGAGCATTATATCAAGGAGGTGCTGTATGCATTAAAAGATGAATCTAAAACGAGAACCATCATTATCATAGCACATAGGCTTTCTACTATAAAAGCTGCCGATAAGATCTTTGTTATGGATGATGGTCGCATCATTGAGATGGGAGATCATGAAGAGCTTATGCGCAACGATGGACTTTATGCAAAATTAACTAAAATTCAAGCAGATATTTTGACTTGA 1980 0.4424 MMSPDPNFLHSTLGLSQIPRWNIFFPCNSTKSQTHHFSSLTHSGRSEIFRVSGPETRSQVGFPFAKRVGSSTSILPSGSWWALPELREDGAEPTAAMLALRRMWELVADERLVAFVAAGSLVIAALSEITMPSILAASIFSAQSGETVAFSRNALFLLVLCLTSGICSGLRSGCFGILNVTLDISYFDKERVGDLTSRLAADCQRLSHVIGNDLQLILRNSCQGTGAIINLMALSWPLALSALVICSILSAIFLVYGQYQRKAAKLIQDFTACANDVAQETLSSIRIVRAYGTGKKEFGRYKQLLQSLAFINVRESVASGFWNLIFNTLYRSTQIFAVVLVGMSVLRCHVTVEQLTKYVLYCEWLIYATWRVTNSLTSLLQSIGASEQIFQLMNLLPSDQFLAKGVKLERLVGHIQFANVSFHYPARSMMPVLECLKFSIEANQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLNELDIRWLREHIGYVAQEPHLFHMDIKSNIKYGCPTNIKQADIERAAKKANAHDFISSLPNGYETLVDDNALSGGQKQRIAIARAILRDPVIMILDEATSALDSESEHYIKEVLYALKDESKTRTIIIIAHRLSTIKAADKIFVMDDGRIIEMGDHEELMRNDGLYAKLTKIQADILT* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0577 659 SUPERFAMILY ABC transporter transmembrane region 101 399 IPR036640 GO:0005524|GO:0016021
Gso16g0577 659 PANTHER ATP-BINDING ABC TRANSPORTER 54 658 - -
Gso16g0577 659 Pfam ABC transporter transmembrane region 181 363 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0577 659 PANTHER ABC TRANSPORTER B FAMILY 54 658 - -
Gso16g0577 659 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 415 653 IPR003439 GO:0005524
Gso16g0577 659 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524
Gso16g0577 659 Pfam ABC transporter 435 581 IPR003439 GO:0005524
Gso16g0577 659 Gene3D - 405 657 IPR027417 -
Gso16g0577 659 SMART AAA_5 442 630 IPR003593 -
Gso16g0577 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 654 IPR027417 -
Gso16g0577 659 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g0577 659 CDD ABC_6TM_TAP 117 389 - -
Gso16g0577 659 Gene3D ABC transporter type 1, transmembrane domain 95 399 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0577 Gso-Chr16 7029958 7055412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0577 183 654 Calmodulin-binding Proteins AT2G36910 36.383 1.37e-76 265