Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0576 ATGGACTCACCGCCCAGTAATCACCACGCCGTCGACGGAGACGCCAACGACCTCGTTAGACCCTTTTCCCACCGCGACGACGACGGCAAACCCCAACCCCTCACCGGCGACGGCGCCAGTCCCGGAAAGATATTCATAGGGGGTTTAGCGAGAGAAACGACGATTGCGCAATTCATCAAGCACTTTGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGGCAGCCTCGCGGTTTCGGCTTCATAACTTACGCCGATCCCTCTGTGGTTGATACAGTGATTGAGGACACTCACATTATCAATGGCAAGCAGGTGGAGATTAAGCGGACGATACCAAGGGGGGCTGTTGGCTCGAACTCAAAGGACTTCCGAACGAAGAAGATTTTTGTGGGTGGAATTCCTTCTACTGTGACCGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCTACTAATCGTTCACGTGGATTTGGCTTTATCACATATGACTCCGAAGAAGCTGTTGATGATCTCTTATCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCCAAGAAGCCAAATCCACCAGCTCCGTCATCCAAGCGCTATAATGACTCCCGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGACGGATTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCCATGGGGCCATATAGAGGTGATCCTTCACTTGGGTATGCTGGTCGATATGGTGGAGGCTATGGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCTAGTGAGGGTTATGGGGCATATGGTGGTGGTGGGGGTGGTGGTTCTTCTGGTAGCGCCTACGGAAGCAGCAGCTATGATGCCAGCTTAGGGGGCGGATATGGGGCCGCTGCTGGAGGCTCCTTTTATGGGACTAGAGGGGGATACGGTGGTGCAGGAACTGGTCGATATCATCCTTATGGAAGATAG 1119 0.5112 MDSPPSNHHAVDGDANDLVRPFSHRDDDGKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLSVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDSRSSYGGGYGDAYDGFGGNFGMGGYRSGGAYGGRGSAYGGFGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGGYGRGYDLGGYGGPSEGYGAYGGGGGGGSSGSAYGSSSYDASLGGGYGAAAGGSFYGTRGGYGGAGTGRYHPYGR* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0576 372 Gene3D - 124 240 IPR012677 -
Gso16g0576 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Gso16g0576 372 MobiDBLite consensus disorder prediction 13 32 - -
Gso16g0576 372 Gene3D - 42 121 IPR012677 -
Gso16g0576 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Gso16g0576 372 SMART rrm1_1 43 114 IPR000504 GO:0003723
Gso16g0576 372 SMART rrm1_1 133 206 IPR000504 GO:0003723
Gso16g0576 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 372 - -
Gso16g0576 372 MobiDBLite consensus disorder prediction 1 41 - -
Gso16g0576 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Gso16g0576 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Gso16g0576 372 MobiDBLite consensus disorder prediction 206 228 - -
Gso16g0576 372 SUPERFAMILY RNA-binding domain, RBD 38 121 IPR035979 GO:0003676
Gso16g0576 372 SUPERFAMILY RNA-binding domain, RBD 128 240 IPR035979 GO:0003676
Gso16g0576 372 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0576 Gso-Chr16 7011466 7015696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0576 22 186 Eukaryotic Initiation Factors Gene Family AT1G71770 26.230 4.69e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0576 K12741 - gmx:100813165 499.204