Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0572 ATGGAGAAAGAGGTTGTGGAAAGCCTTTGGAATGGTAACACAGAAATGCAGATTCAAGCAGCTGTGGAACTCAGGAAACTCAGCAGAAAGCAGAGGCACAACTTGGTGGAAAGTGGAGTCATGGTACCTCTAATTTCCATGCTTCATTATGAAAACTATGAAGCCATTGAAGCTGCTCTCTGTGCTCTACTTAGCCTTGCCTTTGGAAGTGAAAGAAACAAGTCAAGGATCATCAAGTCAGGAGCATTGCCAGTGTTGCTGAGTCTCTTCCATTGCCAAAGCCAAACAGTGGCGGAATTGACAATAGCTACATTGCTAACCATCTCCTCTTGCAACTCAAACAAGGTAGCAATTGCTTCCTCTGGGGCCATCCAACTCTTAGCTCAATTTCTCAACAGCACAAGTAGTAGCACTCAGTTCCAACTTGACACACTAGCCACTCTCCACAACCTCTCAACATGCCAGGAGATTATTACACCTTTTGTTGTCTCTTCTGGGGTCATAATTTCCTTGCTTGAACTTATCCACACATCAGAAAAATCATCTACGTTGGTTGAGAAAGCAATTGGGTTGCTAGAACACATTGTGACTTCATCAAAGAGTGCACTGTGTGAGGCTGCTAGTATTGGGGGAGCAGTTAGAACCTTAGTAGAGACTATTGAAGATGGGTCACTTCAAAGCAAAGAGCATGCTGTGGGGACACTCCTCCTTTTTTGCCAAAGCTCAAGAGAAAAATTTAGAGGAATGATATTGAGAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACTTGGAGAGCCAAAAATTTGGCCAAGAAATTATTGCTGCTACTGAGGGATTGCTCCAATTATAGTTCAACTAGTAATAAACAAATTAACTATGAGGTTGTGGAACGGATCATGGAAGAAATTGATGATGCTGAAGGGGAGGAATTGGCTGAGACTACTTTGAGATTGGTAGAGGAAATGATTGCAAAACTTAGTACATAA 999 0.4274 MEKEVVESLWNGNTEMQIQAAVELRKLSRKQRHNLVESGVMVPLISMLHYENYEAIEAALCALLSLAFGSERNKSRIIKSGALPVLLSLFHCQSQTVAELTIATLLTISSCNSNKVAIASSGAIQLLAQFLNSTSSSTQFQLDTLATLHNLSTCQEIITPFVVSSGVIISLLELIHTSEKSSTLVEKAIGLLEHIVTSSKSALCEAASIGGAVRTLVETIEDGSLQSKEHAVGTLLLFCQSSREKFRGMILREGVMPGLLQLSVDGTWRAKNLAKKLLLLLRDCSNYSSTSNKQINYEVVERIMEEIDDAEGEELAETTLRLVEEMIAKLST* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0572 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Gso16g0572 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 195 IPR000225 GO:0005515
Gso16g0572 332 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 311 - -
Gso16g0572 332 SMART arm_5 70 110 IPR000225 GO:0005515
Gso16g0572 332 SMART arm_5 200 240 IPR000225 GO:0005515
Gso16g0572 332 SMART arm_5 154 197 IPR000225 GO:0005515
Gso16g0572 332 SMART arm_5 111 153 IPR000225 GO:0005515
Gso16g0572 332 SMART arm_5 28 68 IPR000225 GO:0005515
Gso16g0572 332 Gene3D - 200 321 IPR011989 -
Gso16g0572 332 Pfam Armadillo/beta-catenin-like repeat 112 152 IPR000225 GO:0005515
Gso16g0572 332 SUPERFAMILY ARM repeat 4 313 IPR016024 -
Gso16g0572 332 Gene3D - 3 199 IPR011989 -
Gso16g0572 332 PANTHER U BOX DOMAIN-CONTAINING 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0572 Gso-Chr16 6953898 6955873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0572 3 283 U-box Gene Family AT2G23140 32.168 2.18e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0572 - - gmx:100811007 615.535