Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0566 ATGGCTAGGAGTTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAGGATTGTGGGGCATATCGTGAATGTCCAAACTGTTCTTATCATATTGATAACAGTGATGTTTCTACTGAGTGGCCTGGGTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGCAAAATGTGGCATTGGAAACACTAAGCAACACTTGTTTATCAATGAGTTCATCCCAACACTGGAAGGAGACCAAGGTATTTGCTACACACATCCGGAAAATCTTCCAGGTGCTAAGAAAGATGGGAATTATGTCCATTTCTTTCACAGAACAACCAATGCATATGCTACTGGTCAACGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGCAAGACAAAAGCTATAATAGAAGATGGAGTACATAAGGGCTTTAAGAAGATCATGGTTATTTACATAAGATCTAGTGAGAATGGGTCCAAGCCCTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGAAGAAGATGAGAAAGAAGCTGAATATGTGGTTTCAAAAGTTTTTTATCAACAGCAAAAGCAGACTGAGAAAAATGAGGACAATCCAATGGCTGGAGATCCTGCCAATATAATATCACGAACAAGTCCAAGAACTCCAAAACCAAATCCCCCCAATCCGCCTCGTACGGGAAAATCTGTTGATTGTGATGATAACATTGATGAAACTGTACTTCTGTCTGCTGCCCTGGATACCAAGACAATCCCTGAAGGATCACTTGCCCCACAATCTGATATTCAGGATCAAGACAATACTGGTGATGCTGCATGGTTAGCCGGCGAATCACAGGCTGAGGAAAACTCTGAATATGATGGCTTGGACGACATCTTATTGTGCAACGAGATCTTAGATTCTTCTGCTCTGTTGAATGACTCTGGATTGGACTACACCAATCTCGATGACATTGCAAGCTATGCTACACAAAGGGCTAGAAATGATAATGAACCTTGCGGAATTTCTCTCCTGGATACACTGGAATTGGATACTCCAGATTTTGATCTTTCTAGTTTATATTTTTGTTCTCAAGACAGTAGTATTCTTGACTGGATGGACAGGTTATGA 1200 0.4092 MARSWLIDIGGFAKKVKSTTLSSADQIKDCGAYRECPNCSYHIDNSDVSTEWPGFPLGVKFDPSDVELLEHLAAKCGIGNTKQHLFINEFIPTLEGDQGICYTHPENLPGAKKDGNYVHFFHRTTNAYATGQRKRRKIHHQQGLTEEHVRWHKTGKTKAIIEDGVHKGFKKIMVIYIRSSENGSKPYKSNWVMHQYHLGTEEDEKEAEYVVSKVFYQQQKQTEKNEDNPMAGDPANIISRTSPRTPKPNPPNPPRTGKSVDCDDNIDETVLLSAALDTKTIPEGSLAPQSDIQDQDNTGDAAWLAGESQAEENSEYDGLDDILLCNEILDSSALLNDSGLDYTNLDDIASYATQRARNDNEPCGISLLDTLELDTPDFDLSSLYFCSQDSSILDWMDRL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0566 399 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 397 IPR044799 GO:0003700
Gso16g0566 399 Pfam No apical meristem (NAM) protein 56 198 IPR003441 GO:0003677|GO:0006355
Gso16g0566 399 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 397 - -
Gso16g0566 399 SUPERFAMILY NAC domain 39 217 IPR036093 GO:0003677|GO:0006355
Gso16g0566 399 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
Gso16g0566 399 ProSiteProfiles NAC domain profile. 55 217 IPR003441 GO:0003677|GO:0006355
Gso16g0566 399 MobiDBLite consensus disorder prediction 220 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0566 Gso-Chr16 6862861 6868620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0566 33 219 NAC Transcription Factor Family AT4G28500 52.910 7.33e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g0566 NAM 6.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0566 - - gmx:100794879 811.216