Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0565 ATGGGATCTGGAAATGAGGTTCACTCAGTTGTGGAGTTCAATTTGGATGCTAAGTGGCTTATAGATCCCAAACAACTATTTGTTGGGCCTAAAATTGGGGAAGGTGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCAGAACGTTGCTGTTAAGATTGTTAATAAGGGTGAAACCCCAGAACAGATTTCTAGGAGAGAGGCTCGGTTTGCCAGAGAGATTGCCATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATTGTAACTGAACTTCTCTTAGGTGGAACATTGCGCAAACACCTGTGGAGTATCCGGCCGAAGTGTTTGGATATGCGCATAGCAGTTGGATTTGCTCTCGATATTGCCCGTGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGATAACTTGATCTTGACAGAAGATCATAAAACTGTTAAACTTGCTGATTTCGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGGACATATCGATGGATGGCTCCAGAACTTTACAGCACTGTTACTCTGAGACAAGGGGAGAAGAAGCATTACAACCATAAGGTGGATGCCTATAGCTTTGCTATAGTGTTGTGGGAACTCATCCATAATAAGTTACCTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAACGATCGACCCAATTTTAGTCAAATAATAGAGATGCTGCTTCGATATCTAACTACTATTTCACCATCTGAGCCGGTTGTTCCAATGCGAATGATGTCTAAGAATGCTGTATTGCCACCGGAATCTCCCGGTACAAGTGCTTTAATGGCTAGAAGAGATGATTCTGGAGAAACCCCAAAAGGTGGCAATATTGAAGGTAGGTCTAAAGGGTTTTTCTTCTGCTGTTACTGA 1050 0.42 MGSGNEVHSVVEFNLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIVNKGETPEQISRREARFAREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKHLWSIRPKCLDMRIAVGFALDIARAMECLHSHGIIHRDLKPDNLILTEDHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSADELPEDLALIVTSCWKEDPNDRPNFSQIIEMLLRYLTTISPSEPVVPMRMMSKNAVLPPESPGTSALMARRDDSGETPKGGNIEGRSKGFFFCCY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0565 349 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0565 349 PANTHER PROTEIN KINASE ATN1 1 328 - -
Gso16g0565 349 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Gso16g0565 349 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Gso16g0565 349 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Gso16g0565 349 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Gso16g0565 349 CDD STKc_MAP3K-like 32 286 - -
Gso16g0565 349 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Gso16g0565 349 SUPERFAMILY Protein kinase-like (PK-like) 17 312 IPR011009 -
Gso16g0565 349 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Gso16g0565 349 MobiDBLite consensus disorder prediction 311 336 - -
Gso16g0565 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gso16g0565 349 Gene3D Transferase(Phosphotransferase) domain 1 108 309 - -
Gso16g0565 349 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0565 349 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Gso16g0565 349 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0565 Gso-Chr16 6854508 6858652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0565 1 348 MAP Kinase Kinase Kinase AT3G27560 76.271 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso16g0565 PK_Tyr_Ser-Thr 3.6e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0565 - - gmx:100808329 709.523