Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0537 ATGGTGTTCATATTTCCAACGCTTCTGTCCATGAAGCTCCAACCACTTTTGCTGCTTCTTGTGATGTACTTCTGTGCATTTGCTGCTTCTTCTGAGATTGCTTCAGAAGCAAATGCTTTGTTGAAGTGGAAATCCAGCCTTGACAACCAAAGTCATGCTTCTCTTTCTTCATGGAGTGGCAATAATCCTTGCAATTGGCTCGGAATTGCATGTGATGAGTTCAATTCTGTTTCCAACATAAATCTTACAAATGTTGGATTAAGAGGTACGCTTCAAAGTCTCAACTTCTCATTACTTCCAAACATTCTCACTCTAAATATGAGTCACAACTCCTTGAATGGAACTATTCCTCCTCAAATTGGTTCCTTATCCAATCTCAACACTCTTGACTTGTCCACTAATAAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAGGCTTAGTGTATTATTTATATCCTCTAATGAACTCATTGGACCAATCCCTGCTTCCATAGGCAATTTGGTCAATTTGGACTCCATGCTCCTTCGAGAAAATAAACTCTATGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTGCTGTATTATCTATATCCTTAAATGAACTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACTCCATGCTCCTTCGGAAAAATAAACTCTTTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTAGTGTATTATCTATATACTCTAATGAACTCACTGGACCAATCCCATTAACAACTTACATAGGGAACTTGGTCAATTTGGACTACATTGGCCTTTATGAAAATAAACTCTCTGGGTCCATACCTTTCAGCATTGGAAATTTGTCAAAGCTTAGTGTATTAGCTATATCCTCTAATGAACTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCCAGTTGGACTCCTTGTTCCTTTATGAAAATAAACTCTCTGGGTCAATCCCAGCTTCCATATGCAACTTGGTCAATTTGGACTACATTTGCCTTCATGAAAATAAACTCTCTGGGTCCATTCCTTTCACCATTGAAAATTTGTCAAAGCTTAGTGAATTATCTATATCCTTAAATGAACTCACTGGATCAATTCCTTCAACTATTGGAAATTTATCAAATGTCAGGAAATTATTATTTTTTGGAAATGAACTTGGTGGCAAGATTCCAATAGAAATGAGCATGCTTACTGCTCTCAAAAATTTGCAGCTAGCTGACAATAATTTTGTAGGCCATTTACCTCAAAACATTTGCATTGGTGGAACGTTGAAAAATTTTACCGCTGGTAATAACAACTTCATAGGCCCAATTCCAGTGAGTTTGAAGAATTGCTCCAGCCTTATAAGAGTCAGGCTTCAGAGAAACCAGCTAACTGGGGATATAACAGATGCTTTTGGTGTACTTCCAAATTTGGACCACATCGAATTGAGTGACAATAACTTTTATGGTCAACTTTCACCTAACTGGGGAAAGTTTCGTAGCCTCACAAGCCTCATGATCTCCAACAATAATTTATCAGGTGTGATACCACCAGAACTAGCTGGGGCAACCAAATTACAACGACTTCACCTGTCCTCAAACCATCTTACAGGAAACATTCCACATGATTTATGTAACTTGCCCTTGTTTGATCTCTCACTCGACAACAATAATCTTACAGGAAATGTTCCCAAAGAAATAGCATCAATGCAGAAACTTCAAATTTTGAAGCTTGGATCAAATAAGTTGTCTGGCTTAATCCCAAAACAACTAGGAAATTTACTCAATTTATTGAACATGAGTCTGAGCCAAAATAATTTTCAGGGAAATATTCCTTCAGAGCTTGGCAAACTGAAATTTCTTAGGAGTCTTGATCTTGGTGGAAATTCATTGAGAGGAACAATACCTTCAATGTTTGGAGAATTAAAAAGCTTAGAAACACTGAATCTCTCTCACAATAATCTTTCAGGTGATCTCTCTACCTTCGATGATATGACGAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGTCCACTTCCAAACATTCTAGCCTTCCACAATGCTAAAATTGAAGCATTGAGAAATGATAAAGGCTTGTGTGGCAATGTCTCTGGCTTGGAGCCTTGCTCAACATCAAGTGGGAAATCTCATAATCATATGAGGAAGAAAGTAATGATAGTAATTTTACCCCTTACTTTGGGCATTCTAATACTGGCATTATTTGCTTTCGGAGTCTCGTATCATTTATGCCAAACCTCAACGAACAAAGAAGACCAGGCTACAAGTATACAAACTCCTAACATATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTCGAGAATATTATTGAAGCCACAGAAGATTTTGACGACAAACATCTCATTGGTGTTGGAGGGCAAGGATGTGTTTACAAAGCAGTGCTGCCTACAGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTCCAAATGGAGAGATGCTCAATCTGAAAGCTTTCAGATGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACAATTCTCATTTTTGGTGTGTGAATTCCTGGAGAATGGCTGTGTTGAGAAGACTCTGAAGGATGATGGACAAGCAAGGGCATTTGATTGGTATAAGAGGGTGAATGTCGTTAAAGATGTAGCAAATGCTTTGTTCTATATGCACCATGAATGCTCACCTCGAATTGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCCGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTGAATGAGAAATGTGATGTGTATAGTTTTGGGGTCCTAGCATTGGAAATACTTATTGGGAAGCACCCTGGTGATGTTATATCTTCTTTATTGGGATCATCTCCATCTACCCTTGTGGCCTCAACACTCGATCACATGGCATTGATGGATAAGTTGGATCCACGTCTCCCTCATCCAACAAAGCCAATTGGTAAGGAAGTGGCATCAATTGCAAAGATAGCAATGGCCTGCTTGACTGAAAGTCCACTATCTCGCCCTACCATGGAGCAGGTTGCCAATGAGCTGGTAATGGGAAGCTCATCTTCAATGGATTAG 3261 0.391 MVFIFPTLLSMKLQPLLLLLVMYFCAFAASSEIASEANALLKWKSSLDNQSHASLSSWSGNNPCNWLGIACDEFNSVSNINLTNVGLRGTLQSLNFSLLPNILTLNMSHNSLNGTIPPQIGSLSNLNTLDLSTNKLSGSIPFTIGNLSRLSVLFISSNELIGPIPASIGNLVNLDSMLLRENKLYGSIPFTIGNLSKLAVLSISLNELTGPIPASIGNLVNLDSMLLRKNKLFGSIPFTIGNLSKLSVLSIYSNELTGPIPLTTYIGNLVNLDYIGLYENKLSGSIPFSIGNLSKLSVLAISSNELTGPIPASIGNLVQLDSLFLYENKLSGSIPASICNLVNLDYICLHENKLSGSIPFTIENLSKLSELSISLNELTGSIPSTIGNLSNVRKLLFFGNELGGKIPIEMSMLTALKNLQLADNNFVGHLPQNICIGGTLKNFTAGNNNFIGPIPVSLKNCSSLIRVRLQRNQLTGDITDAFGVLPNLDHIELSDNNFYGQLSPNWGKFRSLTSLMISNNNLSGVIPPELAGATKLQRLHLSSNHLTGNIPHDLCNLPLFDLSLDNNNLTGNVPKEIASMQKLQILKLGSNKLSGLIPKQLGNLLNLLNMSLSQNNFQGNIPSELGKLKFLRSLDLGGNSLRGTIPSMFGELKSLETLNLSHNNLSGDLSTFDDMTSLTSIDISYNQFEGPLPNILAFHNAKIEALRNDKGLCGNVSGLEPCSTSSGKSHNHMRKKVMIVILPLTLGILILALFAFGVSYHLCQTSTNKEDQATSIQTPNIFAIWSFDGKMVFENIIEATEDFDDKHLIGVGGQGCVYKAVLPTGQVVAVKKLHSVPNGEMLNLKAFRCEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLENGCVEKTLKDDGQARAFDWYKRVNVVKDVANALFYMHHECSPRIVHRDISSKNVLLDSEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILIGKHPGDVISSLLGSSPSTLVASTLDHMALMDKLDPRLPHPTKPIGKEVASIAKIAMACLTESPLSRPTMEQVANELVMGSSSSMD* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0537 1086 Gene3D Ribonuclease Inhibitor 437 731 IPR032675 -
Gso16g0537 1086 Gene3D Ribonuclease Inhibitor 264 436 IPR032675 -
Gso16g0537 1086 Pfam Protein kinase domain 804 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0537 1086 PRINTS Leucine-rich repeat signature 126 139 - -
Gso16g0537 1086 PRINTS Leucine-rich repeat signature 652 665 - -
Gso16g0537 1086 SUPERFAMILY L domain-like 34 310 - -
Gso16g0537 1086 Gene3D Phosphorylase Kinase; domain 1 762 881 - -
Gso16g0537 1086 SUPERFAMILY Protein kinase-like (PK-like) 783 1077 IPR011009 -
Gso16g0537 1086 ProSiteProfiles Leucine-rich repeat profile. 654 676 IPR001611 GO:0005515
Gso16g0537 1086 Gene3D Ribonuclease Inhibitor 196 263 IPR032675 -
Gso16g0537 1086 Gene3D Transferase(Phosphotransferase) domain 1 882 1084 - -
Gso16g0537 1086 Pfam Leucine rich repeat 631 688 IPR001611 GO:0005515
Gso16g0537 1086 SUPERFAMILY L domain-like 468 714 - -
Gso16g0537 1086 SMART LRR_typ_2 317 341 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 534 557 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 628 651 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 509 533 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 413 437 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 365 389 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 580 603 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 652 674 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 99 122 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 123 147 IPR003591 -
Gso16g0537 1086 SMART LRR_typ_2 675 698 IPR003591 -
Gso16g0537 1086 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Gso16g0537 1086 ProSiteProfiles Protein kinase domain profile. 803 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0537 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 131 222 - -
Gso16g0537 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 310 1083 - -
Gso16g0537 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 152 - -
Gso16g0537 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 207 332 - -
Gso16g0537 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 207 332 - -
Gso16g0537 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 152 - -
Gso16g0537 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 131 222 - -
Gso16g0537 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 310 1083 - -
Gso16g0537 1086 SUPERFAMILY L domain-like 236 558 - -
Gso16g0537 1086 ProSitePatterns Tyrosine protein kinases specific active-site signature. 927 939 IPR008266 GO:0004672|GO:0006468
Gso16g0537 1086 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0537 Gso-Chr16 6489566 6494529 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0537 13 975 Receptor kinase-like Gene Family AT4G08850 42.418 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0537 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0537 - - gmx:100793419 1657.88