Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0535 ATGAGTCACAACTCCTTGAATGGAACTATTCCTCCTCAAATTGGTTCCTTATCCAATCTCAACACTCTTGACTTGTCCACTAATAACCTCTTTGGTAGCATTCCCAATACCATTGGTAATCTCTCCAAACTCTTGTTTCTTAATCTTTCTGACAATGATCTCTCTGGTACTATTCCTTCTGAAATAGTACACTTGGTTGGTCTTCATACATTGCGCATAGGTGATAATAATTTCACTGGATCCCTTCCTCAAGAAATAGGTAGATTGATGAATCTGAGAATACTTGATATTCCTCGGTCCAATATCTCAGGGACTATCCCAATCTCAATAGAAAAGTTAAGCATTTTGTCTCATCTAGATGTCGAAAGCAACAACCTTTCTGGCAACATTCCACTGAGAATTTGGCACATGAACCTAAAGCATTTGTCATTTGCTGGTAATAACTTCAACGGTTCCATCCCCGAAGAAATTGTGAATTTGAGGAGCATCGAGACTCTCTGGCTTTGGAAAAGTGGGCTTTCTGGCTCCATTCCCAAAGAAATTTGGATGCTGAGGAATCTAACATGGCTCGACATGAGCCAATCCAGTTTCAGCGGGTCTATTCCTCGTGATATTGGGAAGTTAAGGAACCTAAAGATTCTTCGTATGTCGAAAAGTGGCTTGTCTGGCTCCATGCCCGAAGAAATTGGGAAGTTGGTTAACCTCCAGATTCTAGATCTCGGATATAATAATCTTTCTGGCTTCATTCCTCCTGAAATTGGTTTTTTGAAACAACTTGCTCAACTTGATTTGTCTCATAACTTTCTCTCTGGTGAAATCCCCTCTACAATTGGAAACTTGAGCAATTTATATTATCTTTACTTTTATCATAACAGTTTATATGGTTCTATTCCTGATGGAGTGGGAAATCTCCATTCACTTTCCACTATCCAACTGTCGGGCAACAGCCTCTCTGGAGCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACTCCATGCTCCTTTATGAAAATAAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTGGTGACTTAGATATATCCTTTAATGAACTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACTACATGGCCCTTCTTGAAAATAAACTCACTGGATCAATTCCTTCCACTATTGGAAATTTATCAAATGTCAGGGAATTAATAATTATTGGAAATGAACTTGGTGGCAAGATTCCAATAGAAATGAACATGCTTACTGCTCTGGAAAATTTGCAGCTAGCTGACAATAATTTTATAGGCCATTTACCTCAAAACATTTGCATTGGTGGAACGTTGAAATATTTTTCCGCTGAAAATAACAACTTCATAGGCCCAATTCCAGTGAGTTGGAAGAATTGCTCCAGCCTTATAAGAGTCAGGCTTCAGCGAAACCAGCTAACTGGGGATATAACAGATGCTTTTGGTGTACTTCCAAATTTGGACTACCTCGAATTGAGCGACAATAACTTTTATGGTCAACTTTCACCTAACTGGGGAAAGTTTCGTAGCCTCACAAGCCTCACGATCTCCAACAATAATTTATCAGGTGTGATACCACCAGAGCTAGCTGGGGCAACCAAATTACAACGACTTCAGCTGTCTTCAAACCATCTTACAGGAAACATTCCACATGATTTATGTAACTTGCCCTTGTTTGATCTCTCACTCGACAACAATAATCTTACAGGAAATGTTCCCAAAGAAATAGCATCAATGCAGAAACTTCAAATTTTGAAGCTTGGATCAAATAAGTTGTCTGGCTTAATCCCAAAACAACTAGGAAATTTGCTCAATTTATTGAACATGAGTCTGAGCCAAAATAATTTTCAGGGAAATATTCCTTCAGAGCTTGGCAAACTGAAAATTCTCACGAGTCTTGATCTTGGTGGAAATTCTTTGAGAGGAGCAATACCTTCAATGTTTGGAGAATTAAAAAGCTTAGAAACACTGAATCTCTCTCACAATAATCTTTCAGGTAATCTCTCTAGCTTCGATGATATGACGAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGTCCACTTCCAAACATTCTAGCCTTCCACAATGCTAAAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGGAGCCTTGCTCAACATCAAGTGGGAAATCTCATAATCATATGAGGAAGAAAATAATAATAGTAATTTTACCCCTTACTTTGGGTATTCTAATACTGGCATTATTTGCTTTCGGAGTCTCGTATCATTTATGCCAAACCTCAACGAAAAAAGAAGACCAGGCTACAAATATACAAACTCCAGACATATTTGCAATATGGAATTTTGATGGCAAAATGGTGTTCGAGAATATTATTGAAGCCACAGAAGATTTTGACGACAAACATCTCATTGGTGTTGGAGGGCAAGGATGTGTTTACAAAGCAGTGCTCCCTGCAGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTCCAAATGGAGAGATGCTCAATCTGAAAGCTTTCACATGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACAATTCTCATTTTTGGTGTGTGAATTCCTGGAGAATGGCAGTGTTGAGAAGACTCTGAAGGATGATGGACAAGCAATGGCATTTGATTGGTATAAGAGGGTGAATGTTGTTAAAGATGTAGCAAATGCTTTGTGCTATATGCACCATGAATGCTCACCTCGAATTGTTCATCGTGATGTATCAAGCAAGAATGTTCTTTTGGATTCCGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTGAATGAGAAATGTGACGTGTATAGTTTTGGGGTCCTAGCATGGGAAATACTTTTTGGGAAGCACCCTGGTGATGTTATATCTTCTTTATTGGGATCATCTCCATCTACTCTTGTGGCCTCAACACTCGATCACATGGCATTGATGGATAAGTTGGACCCACGTCTCCCTCATCCAACAAAGCCAATTGGTAAGGAAGTGGCATCAATTGCAAAGATAGCAATGGCCTGCTTGACTGAAAGTCCACGATCTCGCCCTACCATGGAGCAGGTTGCCAATGAGTTGGTAATGGGAAGCTCATCTTCAATGGATTAG 3294 0.3968 MSHNSLNGTIPPQIGSLSNLNTLDLSTNNLFGSIPNTIGNLSKLLFLNLSDNDLSGTIPSEIVHLVGLHTLRIGDNNFTGSLPQEIGRLMNLRILDIPRSNISGTIPISIEKLSILSHLDVESNNLSGNIPLRIWHMNLKHLSFAGNNFNGSIPEEIVNLRSIETLWLWKSGLSGSIPKEIWMLRNLTWLDMSQSSFSGSIPRDIGKLRNLKILRMSKSGLSGSMPEEIGKLVNLQILDLGYNNLSGFIPPEIGFLKQLAQLDLSHNFLSGEIPSTIGNLSNLYYLYFYHNSLYGSIPDGVGNLHSLSTIQLSGNSLSGAIPASIGNLVNLDSMLLYENKLSGSIPFTIGNLSKLGDLDISFNELTGPIPASIGNLVNLDYMALLENKLTGSIPSTIGNLSNVRELIIIGNELGGKIPIEMNMLTALENLQLADNNFIGHLPQNICIGGTLKYFSAENNNFIGPIPVSWKNCSSLIRVRLQRNQLTGDITDAFGVLPNLDYLELSDNNFYGQLSPNWGKFRSLTSLTISNNNLSGVIPPELAGATKLQRLQLSSNHLTGNIPHDLCNLPLFDLSLDNNNLTGNVPKEIASMQKLQILKLGSNKLSGLIPKQLGNLLNLLNMSLSQNNFQGNIPSELGKLKILTSLDLGGNSLRGAIPSMFGELKSLETLNLSHNNLSGNLSSFDDMTSLTSIDISYNQFEGPLPNILAFHNAKIEALRNNKGLCGNVTGLEPCSTSSGKSHNHMRKKIIIVILPLTLGILILALFAFGVSYHLCQTSTKKEDQATNIQTPDIFAIWNFDGKMVFENIIEATEDFDDKHLIGVGGQGCVYKAVLPAGQVVAVKKLHSVPNGEMLNLKAFTCEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLENGSVEKTLKDDGQAMAFDWYKRVNVVKDVANALCYMHHECSPRIVHRDVSSKNVLLDSEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILFGKHPGDVISSLLGSSPSTLVASTLDHMALMDKLDPRLPHPTKPIGKEVASIAKIAMACLTESPRSRPTMEQVANELVMGSSSSMD* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0535 1097 Gene3D Ribonuclease Inhibitor 396 742 IPR032675 -
Gso16g0535 1097 Gene3D Ribonuclease Inhibitor 136 395 IPR032675 -
Gso16g0535 1097 Gene3D Phosphorylase Kinase; domain 1 773 892 - -
Gso16g0535 1097 SUPERFAMILY L domain-like 451 725 - -
Gso16g0535 1097 Gene3D Ribonuclease Inhibitor 66 135 IPR032675 -
Gso16g0535 1097 SUPERFAMILY L domain-like 1 217 - -
Gso16g0535 1097 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Gso16g0535 1097 SUPERFAMILY L domain-like 175 469 - -
Gso16g0535 1097 Gene3D Ribonuclease Inhibitor 1 65 IPR032675 -
Gso16g0535 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 54 199 - -
Gso16g0535 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 69 - -
Gso16g0535 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 173 298 - -
Gso16g0535 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 295 1094 - -
Gso16g0535 1097 PRINTS Leucine-rich repeat signature 259 272 - -
Gso16g0535 1097 PRINTS Leucine-rich repeat signature 663 676 - -
Gso16g0535 1097 SUPERFAMILY Protein kinase-like (PK-like) 797 1088 IPR011009 -
Gso16g0535 1097 ProSiteProfiles Protein kinase domain profile. 814 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0535 1097 Pfam Leucine Rich Repeat 234 256 IPR001611 GO:0005515
Gso16g0535 1097 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 173 298 - -
Gso16g0535 1097 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 295 1094 - -
Gso16g0535 1097 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 54 199 - -
Gso16g0535 1097 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 69 - -
Gso16g0535 1097 SMART LRR_typ_2 520 544 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 686 709 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 639 662 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 545 568 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 256 280 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 663 685 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 113 137 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 424 448 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 591 614 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 352 376 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 232 254 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 184 208 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 304 328 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 17 41 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 65 89 IPR003591 -
Gso16g0535 1097 SMART LRR_typ_2 496 519 IPR003591 -
Gso16g0535 1097 Pfam Leucine rich repeat 642 699 IPR001611 GO:0005515
Gso16g0535 1097 Pfam Protein kinase domain 815 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0535 1097 Gene3D Transferase(Phosphotransferase) domain 1 893 1095 - -
Gso16g0535 1097 ProSitePatterns Tyrosine protein kinases specific active-site signature. 938 950 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0535 Gso-Chr16 6463881 6467731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0535 158 986 Receptor kinase-like Gene Family AT4G08850 44.432 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0535 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0535 - - gmx:100813639 1977.22