Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0534 ATGAGTCACAACTCCTTGAATGGAACTATTCCTCCTCAAATTGGTTCCTTATCCAATCTCAACACTCTTGACTTGTCCACTAATAACCTCTTTGGTAGCATTCCCAATACCATTGGTAATCTCTCCAAACTCTTGTTTCTTAATCTTTCTGACAATGATCTCTCTGGTACTATTCCTTCTGAAATAGTACACTTGGTTGGTCTTCATACATTGCGCATAGGTGATAATAATTTCACTGGATCCCTTCCTCAAGAAATAGGTAGATTGATGAATCTGAGAATACTTGATATTCCTCGGTCCAATATCTCAGGGACTATCCCTATCTCAATAGAAAAGTTATGCAATTTGTCTCATCTAGATGTCGAAAGCAACGACCTTTCTGGCAACATTCCACTGAGAATTTGGCATATGAACCTAAAGCATTTGTCATTTGCTGATAATAACTTCAACGGTTCCATCCCCAAAGAAATTGCGAATTTGAGGAGCATCGAGACTCTCTGGCTTTGGAAAAGTGGGCTTTCTGGCTCCATTCCCAAAGAAATTTGGATGCTGAGGAATCTAACATGGCTTGACATGAGGCAATCCAGTTTCAGCGGGTCTATTCCTCGTGATATTGGGAAGTTAAGGAACCTAAAGATTCTTCGTATGTCGAAAAGTGGCTTGTCTGGCTCCATACCCGAAGAAATTGGGAAGTTGGTTAACCTCCAAATTCTATATCTCGGAAGGAATAATCTTTCTGGCTTCATTCCTCCTGAAATTGGTTTTTTGAAACAACTTGGTCAACTTGATTTGTCTGATAACTTTCTCTCTGGTGAAATCCCCTCTACAATTGGAAACTTGAGCAATTTATATTATCTTTACCTTTATAAAAACAGTTTATATGGTTCTATTCCTGATGGAGTGGGAAATCTCCATTCACTTTCCACTATCCAACTGTCGGGCAACAGCCTCTCTGGAGCAATCCCAGCTTCCATAGGCAATTTGGTCCATTTGGACTCCTTGTTCCTTGATGGAAATGAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTGGTGAATTATTTATACACTCTAATGAACTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTGAATTTGGACTCCATGATCCTTAATGTAAATAAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTAGTACATTATCTATATCCTATAATAAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAATGTCAGGGAATTAGTATTTATTGGAAATGAACTTGGTGGCAAGATTCCAATAGAAATGAGCATGCTTACTGCTCTGGAAAGTTTGCAGCTAGCTGACAATGATTTTATAGGCCATTTACCTCAAAACATTTGCATTGGTGGAACGTTCAAAAAAATTTCTGCTGAAAATAACAACTTCATAGGCCCAATTCCAGTGAGTTTGAAGAATTGCTCCAGCCTTATAAGAGTCAGGCTTCAGAGAAACCAGCTAACTGGGGATATAACAGATGCTTTTGGTGTACTTCCAAATTTGGACTACATCGAATTGAGTGACAATAACTTTTATGGTCAACTTTCACCTAACTGGGGAAAGTTTCGTAGCCTCACAAGCCTCAAGATCTCCAACAATAATTTATCAGGTGTCATACCACCAGAACTAGCTGGGGCAACCAAATTACAACAACTTCACCTGTCCTCAAACCATCTTACAGGAAACATTCCACATGATTTATGTAACTTGCCCTTGTTTGATCTCTCACTCGACAACAATAATCTTACAGGAAATGTTCCCAAAGAAATAGCATCAATGCAGAAACTTCAAATTTTGAAGCTTGGATCAAATAAGTTGTCTGGCTTAATCCCAAAACAACTAGGAAATTTGCTCAATTTATTGAACATGAGTCTGAGCCAAAATAAATTTCAGGGAAATATTCCTTCAGAGCTTGGCAAACTGAAATTTCTTACGAGTCTTGATCTTGGTGGAAATTCTTTGAGAGGAACAATACCTTCAATGTTTGGAGAATTAAAAAGCTTAGAAACACTGAATCTCTCTCGCAATAATCTTTCAGGTGATCTCTCTAGCTTCGATGATATGACGAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGTCCACTTCCAAACATTCTAGCCTTCCACAACGCTAAAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGGAGCGTTGCTCAACATCAAGTGGGAAATCTCATAATCATATGAGGAAGAATGTAATGATAGTAATATTACCTCTTACTTTGGGCATTCTAATACTGGCATTATTTGCTTTCGGAGTCTCGTATCATTTATGCCAAACCTCAACGAACAAAGAAGACCAGGCTACAAGTATACAAACTCCTAACATATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTCGAGAATATTATTGAAGCCACAGAAGATTTTGACGACAAACATCTCATTGGTGTTGGAGGGCAAGGATGTGTTTACAAAGCAGTGCTTCCTACAGGTCAAGTTGTTGCCGTGAAGAAACTCCATTCAGTTCCAAATGGAAAGATGCTCAATCTGAAAGCTTTCACATGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACAATTCTCATTTTTGGTGTGTGAATTCCTGGAGAATGGCAGTGTTGAGAAGACTCTGAAGGATGATGGACAAGCAATGGCATTTGATTGGTATAAGAGGGTGAATGTTGTTAAAGATGTAGCAAATGCTTTGTGCTATATGCACCATGAATGCTCACCTCGAATTGTTCATCGTGATGTATCAAGCAAGAATGTTCTTTTGGATTCCGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTGAATGAGAAATGTGACGTGTATAGTTTTGGGGTCCTAGCATGGGAAATACTTTTTGGGAAGCACCCTGGTGATGTTATATCTTCTTTATTGGGATCATCTCCATCTACTCTTGTGGCCTCAACACTCGATCACATGGCATTGATGGATAAGTTGGACCAACGTCTCCCTCATCCAACAAAGCCAATTGGTAAGGAAGTGGCATCAATTGCAAAGATAGCAATGGCCTGCTTGACTGAAAGTCCACGATCTCGCCCTACCATGGAGCAGGTTGCCAATGAGCTGGAAATGTCAAGCTCATCTTTAATGGATTAG 3366 0.3942 MSHNSLNGTIPPQIGSLSNLNTLDLSTNNLFGSIPNTIGNLSKLLFLNLSDNDLSGTIPSEIVHLVGLHTLRIGDNNFTGSLPQEIGRLMNLRILDIPRSNISGTIPISIEKLCNLSHLDVESNDLSGNIPLRIWHMNLKHLSFADNNFNGSIPKEIANLRSIETLWLWKSGLSGSIPKEIWMLRNLTWLDMRQSSFSGSIPRDIGKLRNLKILRMSKSGLSGSIPEEIGKLVNLQILYLGRNNLSGFIPPEIGFLKQLGQLDLSDNFLSGEIPSTIGNLSNLYYLYLYKNSLYGSIPDGVGNLHSLSTIQLSGNSLSGAIPASIGNLVHLDSLFLDGNELSGSIPFTIGNLSKLGELFIHSNELTGPIPASIGNLVNLDSMILNVNKLSGSIPFTIGNLSKLSTLSISYNKLSGSIPFTIGNLSNVRELVFIGNELGGKIPIEMSMLTALESLQLADNDFIGHLPQNICIGGTFKKISAENNNFIGPIPVSLKNCSSLIRVRLQRNQLTGDITDAFGVLPNLDYIELSDNNFYGQLSPNWGKFRSLTSLKISNNNLSGVIPPELAGATKLQQLHLSSNHLTGNIPHDLCNLPLFDLSLDNNNLTGNVPKEIASMQKLQILKLGSNKLSGLIPKQLGNLLNLLNMSLSQNKFQGNIPSELGKLKFLTSLDLGGNSLRGTIPSMFGELKSLETLNLSRNNLSGDLSSFDDMTSLTSIDISYNQFEGPLPNILAFHNAKIEALRNNKGLCGNVTGLERCSTSSGKSHNHMRKNVMIVILPLTLGILILALFAFGVSYHLCQTSTNKEDQATSIQTPNIFAIWSFDGKMVFENIIEATEDFDDKHLIGVGGQGCVYKAVLPTGQVVAVKKLHSVPNGKMLNLKAFTCEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLENGSVEKTLKDDGQAMAFDWYKRVNVVKDVANALCYMHHECSPRIVHRDVSSKNVLLDSEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILFGKHPGDVISSLLGSSPSTLVASTLDHMALMDKLDQRLPHPTKPIGKEVASIAKIAMACLTESPRSRPTMEQVANELEMSSSSLMD* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0534 1121 SUPERFAMILY L domain-like 478 749 - -
Gso16g0534 1121 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 69 - -
Gso16g0534 1121 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 186 316 - -
Gso16g0534 1121 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 65 197 - -
Gso16g0534 1121 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 305 1118 - -
Gso16g0534 1121 Gene3D Transferase(Phosphotransferase) domain 1 917 1120 - -
Gso16g0534 1121 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 69 - -
Gso16g0534 1121 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 65 197 - -
Gso16g0534 1121 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 186 316 - -
Gso16g0534 1121 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 305 1118 - -
Gso16g0534 1121 SUPERFAMILY L domain-like 138 484 - -
Gso16g0534 1121 Pfam Leucine Rich Repeat 234 256 IPR001611 GO:0005515
Gso16g0534 1121 Gene3D Phosphorylase Kinase; domain 1 797 916 - -
Gso16g0534 1121 Gene3D Ribonuclease Inhibitor 185 252 IPR032675 -
Gso16g0534 1121 ProSitePatterns Tyrosine protein kinases specific active-site signature. 962 974 IPR008266 GO:0004672|GO:0006468
Gso16g0534 1121 SMART LRR_typ_2 569 592 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 280 304 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 615 638 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 328 352 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 65 89 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 687 709 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 663 686 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 17 41 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 448 472 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 113 137 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 232 256 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 544 568 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 710 733 IPR003591 -
Gso16g0534 1121 SMART LRR_typ_2 400 424 IPR003591 -
Gso16g0534 1121 SUPERFAMILY L domain-like 1 217 - -
Gso16g0534 1121 SUPERFAMILY Protein kinase-like (PK-like) 818 1113 IPR011009 -
Gso16g0534 1121 Gene3D Ribonuclease Inhibitor 81 180 IPR032675 -
Gso16g0534 1121 Gene3D Ribonuclease Inhibitor 1 80 IPR032675 -
Gso16g0534 1121 SMART LRR_sd22_2 17 43 - -
Gso16g0534 1121 SMART LRR_sd22_2 136 162 - -
Gso16g0534 1121 SMART LRR_sd22_2 256 282 - -
Gso16g0534 1121 SMART LRR_sd22_2 89 118 - -
Gso16g0534 1121 SMART LRR_sd22_2 328 354 - -
Gso16g0534 1121 SMART LRR_sd22_2 400 426 - -
Gso16g0534 1121 SMART LRR_sd22_2 663 695 - -
Gso16g0534 1121 SMART LRR_sd22_2 615 641 - -
Gso16g0534 1121 MobiDBLite consensus disorder prediction 1099 1121 - -
Gso16g0534 1121 MobiDBLite consensus disorder prediction 1100 1121 - -
Gso16g0534 1121 ProSiteProfiles Leucine-rich repeat profile. 689 711 IPR001611 GO:0005515
Gso16g0534 1121 Pfam Leucine rich repeat 666 723 IPR001611 GO:0005515
Gso16g0534 1121 Pfam Leucine rich repeat 281 341 IPR001611 GO:0005515
Gso16g0534 1121 Pfam Protein kinase domain 839 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0534 1121 Gene3D Ribonuclease Inhibitor 253 471 IPR032675 -
Gso16g0534 1121 Gene3D Ribonuclease Inhibitor 472 766 IPR032675 -
Gso16g0534 1121 ProSiteProfiles Protein kinase domain profile. 838 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0534 Gso-Chr16 6437939 6441698 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0534 16 566 Receptor kinase-like Gene Family AT4G08850 35.145 5.87e-82 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0534 Pkinase 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0534 - - gmx:100813639 2023.44