Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0530 ATGGTGTTCATAATTCCAACGCTTCTGTCCATGAAGCTCCAACCACTTTTGCTGCTTCTTGTGATGTACTTCTGTGCATTTGCTGCTTCTTCTGAGATTGCTTCAGAAGCAAATGCTTTGTTGAAGTGGAAATCCAGCCTTGACAACCAAAGTCGTGCTTCTCTCTCTTCATGGAGTGGCAACAATCCTTCCATTTGGCTCGGAATTGCATGTGATGAGTTCAATTCTGTTTCCAACATAAATCTTACAAATGTTGGATTAAGAGGTACGCTTCAAAATCTCAACTTCTCATTACTTCCAAACATTCTCACTCTAAATATGAGTCACAACTCCTTGAATGGAACTATTCCTCCTCAAATTGGTTCCTTATCCAATCTCAACACTCTTGACTTGTCCACTAATAACCTCTTTGGTAGCATTCCCAATACCATTGGTAATCTCTCCAAACTCTTGTTTCTTAATCTTTCTGACAATGATCTCTCTGGTACTATTCCTTCTGAAATAGTACACTTGGTTGGTCTTCATACATTGCGCATAGGTGATAATAATTTCACTGGATCCCTTCCTCAAGAAATAGGTAGATTGATGAATCTGAGAATACTTGATATTCCTCGGTCCAATATCTCAGGGACTATCCCAATCTCAATAGAAAAGTTATGCAATTTGTCTCATCTAGATGTCGAAAGCAACGACCTTTCTGGCAACATTCCACTGAGAATTTGGCATATGAACCTAAAGCATTTGTCATTTGCTGATAATAACTTCAATGGTTCCATCCCCAAAGAAATTGCGAATTTGAGGAGCATCGAGACTCTCTGGCTTTGGAAAAGTGGGCTTTCTGGCTCCATTCCCAAAGAAATTTGGATGCTGAGGAATCTAACATGGCTTGACATGAGCCAATCCAGTTTCAGCGGGTCTATTCCTCGTGATATTGGGAAGTTAAGGAACCTAAAGATTCTTCGTATGTCGAAAAGTGGCTTGTCTGGCTCCATGCCCGAAGAAATTGGGAAGTTGGTTAACCTCCAGATTCTAGATCTCGGAAATAATAATCTTTATGGCTTCATTCCTCCTCAAATTGGTTTTTTGAAACAACTTGGTACACTTGATTTGTCTGATAACTTTCTCTCTGGTGAAATCCCCTCTACAATTGGAAACTTGAGCAATTTATATTATCTTTACTTTTATGCTAACAGTTTATCTGGTTCTATTCCTGATGGAGTGGGAAATCTCCATTCACTTTCCACTATCCAACTGTCGGGCAACAGCCTCTCTGGAACAATCCCAGCTTCCATAGGCAATTTGATCAATTTGGACTCCATGCTCCTTCATGAAAATAAACTCTCTGGATCAATTGCTTCCATTATTGGAAATTTGTCAAAGCTTAGTGTATTATCTTTATACTCAAATGAGCTCACTGGACCAATCCCAGCTTCCATAGGCAATTTGGTCAATTTGAAAACCATTTACCTTGATGGAAATAAACTCACTGGATCAATTCCTTCAACTATTAGAAATTTATCAAATGTCAGGAAATTAACATTTTTTGGAAATGAACTTGGTGGCAAGATTCCAATAGAAATGAGCATGCTTCCTGCTCTGGAAAATTTGCAGCTAGCTGACAATAATTTTATAGGCCATTTACCTCAAAACATTTGCATTGGTGGAACGTTGAAAAATTTTTCCGCTGATAATAACAACTTCATAGGCCCAATTCCAGTGAGTTTGACGAATTGCTCCAGCCTTATAAGAGTGAGGCTTCAGAAAAACCAGCTAACTGGGGATATAACAGATGCTTTTGGTGTACTTCCAAATTTGGACTACATCGATTTGAGTGACAATAACTTTTATGGTCAACTTTCACCTAACTGGGGAAAGTTTCGTAGCCTCACAAGCCTCATGATCTCCAACAATAATTTATCAGGTGTGATACCACCCGAACTAGCCGGGGCAACCAAATTACAACGACTTCACCTGTCCTCAAACCATCTTACAGGAAACATTCCACATGATTTATGTAACTTGCCCTTGTTTGATCTCTCACTCAACAACAATAATCTTACAGGAAATGTTCCCAAAGAAATAGCATCAATGCAGAAACTTCAATTTTTGAAGCTTGGATCAAATAAGTTGTCTGGCTTAATCCCAAAACAACTAGGAAATTTGCTCAATTTATTGAACATGAGTCTGAGCCAAAATAATTTTCAGGGAAATATTCCTTCAGAGCTTGGCAAACTGAAATCTCTTACGAGTCTTGATCTTGGTGGAAATTCATTGAGAGGAACAATACCTTCAATGTTTGGAGAATTAAAAAGCTTAGAAACACTGAATCTCTCTCACAATAATCTTTCAGGTAATCTCTCTAGCTTCGATGATATGACGAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGTCCACTTCCAAACATTCTAGCCTTCCACAATGCTAAAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGGAGCCTTGCTCAACATCAAGTGGGAAATCTCATAATCATATGATAGTAATTTTACCCCTTACTTTGGGCATTCTAATACTGGCATTATTTGCTTTCGGAGTCTCGTATCATTTATGCCAAACCTCAACGAACAAAGAAGACCAGGCTACAAGTATACAAACTCCTAACATATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTCGAGAATATTATTGAAGCCACAGAAGATTTTGACGACAAACATCTCATTGGTGTTGGAGGGCAAGGATGTGTTTACAAAGCAGTGCTGCCTACAGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTCCAAATGGAGAGATGCTCAATCTGAAAGCTTTCACATGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACAATTCTCATTTTTGGTGTGTGAATTCCTGGAGAATGGCAGTGTCGAGAAGACTCTGAAGGATGATGGACAAGCAATGGCATTTGATTGGTATAAGAGGGTGAATGTTGTTAAAGATGTAGCAAATGCTTTGTTCTATATGCACCATGAATGCTCACCTCGAATTGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCCGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTGAATGAGAAATGTGACGTGTATAGTTTTGGGGTCCTAGCATGGGAAATACTTTTTGGGAAGCACCCTGGTGATGTTATATCTTCTTTGTTGGGATCATCTCCATCTACTCTTGAGGCCTCAAGACTCGATCACATGGCATTGATGGATAAGTTGGACCAACGTCTCCCTCATCCAACAAAGCCAATTGGTAAGGAAGTGGCATCAATTGCAAAGATAGCAATGGCCTGCTTGACTGAAAGTCCACGATCTCGCCCTACCATGGAGCAGGTTGCCAATGAGCTGGTAATGTCAAGCTCCTCTTCAATGGATTAG 3597 0.3937 MVFIIPTLLSMKLQPLLLLLVMYFCAFAASSEIASEANALLKWKSSLDNQSRASLSSWSGNNPSIWLGIACDEFNSVSNINLTNVGLRGTLQNLNFSLLPNILTLNMSHNSLNGTIPPQIGSLSNLNTLDLSTNNLFGSIPNTIGNLSKLLFLNLSDNDLSGTIPSEIVHLVGLHTLRIGDNNFTGSLPQEIGRLMNLRILDIPRSNISGTIPISIEKLCNLSHLDVESNDLSGNIPLRIWHMNLKHLSFADNNFNGSIPKEIANLRSIETLWLWKSGLSGSIPKEIWMLRNLTWLDMSQSSFSGSIPRDIGKLRNLKILRMSKSGLSGSMPEEIGKLVNLQILDLGNNNLYGFIPPQIGFLKQLGTLDLSDNFLSGEIPSTIGNLSNLYYLYFYANSLSGSIPDGVGNLHSLSTIQLSGNSLSGTIPASIGNLINLDSMLLHENKLSGSIASIIGNLSKLSVLSLYSNELTGPIPASIGNLVNLKTIYLDGNKLTGSIPSTIRNLSNVRKLTFFGNELGGKIPIEMSMLPALENLQLADNNFIGHLPQNICIGGTLKNFSADNNNFIGPIPVSLTNCSSLIRVRLQKNQLTGDITDAFGVLPNLDYIDLSDNNFYGQLSPNWGKFRSLTSLMISNNNLSGVIPPELAGATKLQRLHLSSNHLTGNIPHDLCNLPLFDLSLNNNNLTGNVPKEIASMQKLQFLKLGSNKLSGLIPKQLGNLLNLLNMSLSQNNFQGNIPSELGKLKSLTSLDLGGNSLRGTIPSMFGELKSLETLNLSHNNLSGNLSSFDDMTSLTSIDISYNQFEGPLPNILAFHNAKIEALRNNKGLCGNVTGLEPCSTSSGKSHNHMIVILPLTLGILILALFAFGVSYHLCQTSTNKEDQATSIQTPNIFAIWSFDGKMVFENIIEATEDFDDKHLIGVGGQGCVYKAVLPTGQVVAVKKLHSVPNGEMLNLKAFTCEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLENGSVEKTLKDDGQAMAFDWYKRVNVVKDVANALFYMHHECSPRIVHRDISSKNVLLDSEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILFGKHPGDVISSLLGSSPSTLEASRLDHMALMDKLDQRLPHPTKPIGKEVASIAKIAMACLTESPRSRPTMEQVANELVMSSSSSMD* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0530 1198 SMART LRR_sd22_2 195 224 - -
Gso16g0530 1198 SMART LRR_sd22_2 482 508 - -
Gso16g0530 1198 SMART LRR_sd22_2 242 268 - -
Gso16g0530 1198 SMART LRR_sd22_2 697 723 - -
Gso16g0530 1198 SMART LRR_sd22_2 362 388 - -
Gso16g0530 1198 SMART LRR_sd22_2 123 149 - -
Gso16g0530 1198 SMART LRR_sd22_2 745 777 - -
Gso16g0530 1198 Pfam Protein kinase domain 916 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0530 1198 Gene3D Ribonuclease Inhibitor 293 451 IPR032675 -
Gso16g0530 1198 Gene3D Ribonuclease Inhibitor 33 188 IPR032675 -
Gso16g0530 1198 Gene3D Ribonuclease Inhibitor 189 286 IPR032675 -
Gso16g0530 1198 SUPERFAMILY L domain-like 607 833 - -
Gso16g0530 1198 Gene3D Ribonuclease Inhibitor 555 848 IPR032675 -
Gso16g0530 1198 Gene3D Phosphorylase Kinase; domain 1 874 993 - -
Gso16g0530 1198 PRINTS Leucine-rich repeat signature 748 761 - -
Gso16g0530 1198 PRINTS Leucine-rich repeat signature 769 782 - -
Gso16g0530 1198 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Gso16g0530 1198 Gene3D Ribonuclease Inhibitor 452 554 IPR032675 -
Gso16g0530 1198 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 171 303 - -
Gso16g0530 1198 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 175 - -
Gso16g0530 1198 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 293 404 - -
Gso16g0530 1198 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 399 1195 - -
Gso16g0530 1198 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1039 1051 IPR008266 GO:0004672|GO:0006468
Gso16g0530 1198 Pfam Leucine Rich Repeat 652 674 IPR001611 GO:0005515
Gso16g0530 1198 Pfam Leucine Rich Repeat 340 361 IPR001611 GO:0005515
Gso16g0530 1198 SUPERFAMILY RNI-like 248 670 - -
Gso16g0530 1198 ProSiteProfiles Leucine-rich repeat profile. 771 793 IPR001611 GO:0005515
Gso16g0530 1198 ProSiteProfiles Protein kinase domain profile. 915 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0530 1198 Gene3D Transferase(Phosphotransferase) domain 1 994 1197 - -
Gso16g0530 1198 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 171 303 - -
Gso16g0530 1198 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 175 - -
Gso16g0530 1198 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 399 1195 - -
Gso16g0530 1198 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 293 404 - -
Gso16g0530 1198 SUPERFAMILY Protein kinase-like (PK-like) 895 1190 IPR011009 -
Gso16g0530 1198 SMART LRR_typ_2 290 314 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 338 360 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 697 720 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 792 815 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 171 195 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 362 386 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 410 434 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 530 554 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 651 674 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 769 791 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 219 243 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 123 147 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 626 650 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 745 768 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 482 506 IPR003591 -
Gso16g0530 1198 SMART LRR_typ_2 99 122 IPR003591 -
Gso16g0530 1198 SUPERFAMILY L domain-like 71 332 - -
Gso16g0530 1198 Pfam Leucine rich repeat 747 805 IPR001611 GO:0005515
Gso16g0530 1198 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Gso16g0530 1198 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0530 Gso-Chr16 6383254 6387215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0530 13 648 Receptor kinase-like Gene Family AT4G08850 37.072 5.05e-108 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0530 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0530 - - gmx:106794215 2123.59