Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0527 ATGGTGTTCATATTTCCAACGCTTCTGTCCATGAAGCTCCAACCACTTTTGCTGCTTCTTGTGATGTACTTCTGTGCATTTGCTGCTTCTTCTGAGATTGCTTCAGAAGCAAATGCTTTGTTGAAGTGGAAATCCAGCCTTGACAACCAAAGTCATGCTTCTCTCTCTTCATGGAGTGGCAATAATCCTTGCATTTGGCTCGGAATTGCATGTGATGAGTTCAATTCTGTTTCCAACATAAATCTTACAAATGTTGGATTAAGAGGTACGCTTCAAAATCTCAACTTCTCATTACTTCCAAACATTCTCACTCTAAATATGAGTCACAACTCCTTGAATGGAACTATTCCTCCTCAAATTGGTTCCTTATCCAATCTCAACACTCTTGACTTGTCCACTAATAACCTCTTTGGTAGCATTCCCAATACCATTGGTAATCTCTCCAAACTCTTGTTTCTTAATCTTTCTGATAATGATCTCTCTGGTACCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTAGTGTATTATCTATATCCTTTAATGAACTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACTCCATGCACCTTCATAAAAATAAACTCTCTGGGTCCATAACTTTCACCATTGGAAATTTGTCAAAGCTTAGTGATTTATATATATCCTTGAATGAACTTACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACTACATGCTCCTTGATGGAAATAAATTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTAGTGTATTATCTTTATCCTTGAATGAATTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCCATTTGGACTTCTTGTTCCTTGATGAAAATAAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAACTTAGTGTATTATCTATACCCTTGAATGAACTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACACCATGCACCTTCATAAAAATAAACTCTCTGGGTCCATACCTTTCACCATTGAAAATTTGTCAAAGCTTAGTGAATTATCTATACACTCTAATGAACTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACTCCATGCTCCTTCATGAAAATAAACTCTCTGGGTCAATTCCTTTCACCATTGGAAATTTGTCAAAGCTTAGTGTATTATCTTTATCCTTGAATGAATTCACTGGACCAATCCCAGCTTCCATAGGCAACTTGGTCCATTTGGACATCTTGGTCCTTGATGAAAATAAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTAGTGTATTATCTATATCCTTAAATGAACTCACTGGATCAATTCCTTCAACTATTGGAAATTTATCAAATGTCAGGGAATTATATTTTTTTGGAAATGAACTTGGTGGCAAGATTCCAATAGAAATGAGCATGCTTACTGCTCTGGAAAGTTTGCAGCTAGCTTACAATAATTTTATAGGCCATTTACCTCAAAACATTTGCATTGGTGGAACGTTGAAAAATTTTACCGCTGCTAATAACAACTTCATAGGCCCAATTCCAGTGAGTTTGAAGAATTGCTCCAGTCTTATAAGAGTCAGGCTTCAGCGAAACCAGCTAACTGGGGATATAACAGATGCTTTTGGTGTACTTCCAAATTTGGACTACATCGAATTGAGTGACAATAACTTTTATGGTCAACTATCACCTAACTGGGGAAAGTTTCGTAGCCTCACAAGCCTCATGATCTCCAACAATAATTTATCAGGTGTGATACCACCAGAACTAGCTGGGGCAACCAAATTACAACGACTTCACCTGTTCTCAAACCATCTTACAGGAAACATTCCACATGATTTATGTAACTTGCCCTTGTTTGATCTCTCACTCGACAACAATAATCTTACAGGAAATGTTCCCAAAGAAATAGCATCAATGCAGAAACTTCAAATTTTGAAGCTTGGATCAAATAAGTTGTCTGGCTTAATCCCAAAACAACTAGGAAATTTGCTCAATTTATTGAACATGAGTCTGAGCCAAAATAATTTTCAGGGAAATATTCCTTCAGAGCTTGGCAAACTGAAATCTCTTACGAGTCTTGATCTTGGTGGAAATTCATTGAGAGGAACAATACCTTCAATGTTTGGAGAATTAAAAAGCTTAGAAACACTGAATCTCTCTCACAATAATCTTTCAGGTAATCTCTCTAGCTTCGATGATATGACGAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGTCCACTTCCAAACATTCTAGCCTTCCACAATGCTAAAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGGAGCCTTGCTCAACATCAAGTGGGAAATCTCATAATCATATGATAGTAATTTTACCCCTTACTTTGGGCATTCTAATACTGGCATTATTTGCTTTCGGAGTCTCGTATCATTTATGCCAAACCTCAACGAACAAAGAAGACCAGGCTACAAGTATACAAACTCCTAACATATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTTGAGAATATTATTGAAGCCACAGAAGATTTTGACGACAAACATCTCATTGGTGTTGGAGGGCAAGGATGTGTTTACAAAGCAGTGCTGCCTACAGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTCCAAATGGAGAGATGCTCAATCTGAAAGCTTTCACATGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACAATTCTCATTTTTGGTGTGTGAATTCCTGGAGAATGGCAGTGTTGGGAAGACCCTGAAGGATGATGGACAAGCAATGGCATTTGATTGGTATAAGAGGGTTAATGTTGTTAAAGATGTAGCAAATGCTCTGTGCTATATGCACCATGAATGCTCACCTCGAATTGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCCGAATATGTAGCTCATGTCTCAGATTTTGGAACAGCCAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTGAATGAGAAATGTGACGTGTATAGTTTTGGGGTCCTAGCATGGGAAATACTTATTGGGAAGCACCCTGGTGATGTTATATCTTCTTTATTGGGATCATCTCCATCTACTCTTGTGGCCTCAACACTCGATCACATGGCATTGATGGATAAGTTGGACCAACGTCTCCCTCATCCAACAAAGCCAATTGGTAAGGAAGTGGCATCAATTGCAAAGATAGCAATGGCCTGCTTGACTGAAAGTCCACGATCTCGCCCTACCATGGAGCAGGTTGCCAATGAGCTGGTAATGTCAAGCTCATCTTCAATGGATTAG 3528 0.3897 MVFIFPTLLSMKLQPLLLLLVMYFCAFAASSEIASEANALLKWKSSLDNQSHASLSSWSGNNPCIWLGIACDEFNSVSNINLTNVGLRGTLQNLNFSLLPNILTLNMSHNSLNGTIPPQIGSLSNLNTLDLSTNNLFGSIPNTIGNLSKLLFLNLSDNDLSGTIPFTIGNLSKLSVLSISFNELTGPIPASIGNLVNLDSMHLHKNKLSGSITFTIGNLSKLSDLYISLNELTGPIPASIGNLVNLDYMLLDGNKFSGSIPFTIGNLSKLSVLSLSLNEFTGPIPASIGNLVHLDFLFLDENKLSGSIPFTIGNLSKLSVLSIPLNELTGPIPASIGNLVNLDTMHLHKNKLSGSIPFTIENLSKLSELSIHSNELTGPIPASIGNLVNLDSMLLHENKLSGSIPFTIGNLSKLSVLSLSLNEFTGPIPASIGNLVHLDILVLDENKLSGSIPFTIGNLSKLSVLSISLNELTGSIPSTIGNLSNVRELYFFGNELGGKIPIEMSMLTALESLQLAYNNFIGHLPQNICIGGTLKNFTAANNNFIGPIPVSLKNCSSLIRVRLQRNQLTGDITDAFGVLPNLDYIELSDNNFYGQLSPNWGKFRSLTSLMISNNNLSGVIPPELAGATKLQRLHLFSNHLTGNIPHDLCNLPLFDLSLDNNNLTGNVPKEIASMQKLQILKLGSNKLSGLIPKQLGNLLNLLNMSLSQNNFQGNIPSELGKLKSLTSLDLGGNSLRGTIPSMFGELKSLETLNLSHNNLSGNLSSFDDMTSLTSIDISYNQFEGPLPNILAFHNAKIEALRNNKGLCGNVTGLEPCSTSSGKSHNHMIVILPLTLGILILALFAFGVSYHLCQTSTNKEDQATSIQTPNIFAIWSFDGKMVFENIIEATEDFDDKHLIGVGGQGCVYKAVLPTGQVVAVKKLHSVPNGEMLNLKAFTCEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLENGSVGKTLKDDGQAMAFDWYKRVNVVKDVANALCYMHHECSPRIVHRDISSKNVLLDSEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILIGKHPGDVISSLLGSSPSTLVASTLDHMALMDKLDQRLPHPTKPIGKEVASIAKIAMACLTESPRSRPTMEQVANELVMSSSSSMD* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0527 1175 Gene3D Ribonuclease Inhibitor 284 381 IPR032675 -
Gso16g0527 1175 Gene3D Ribonuclease Inhibitor 382 479 IPR032675 -
Gso16g0527 1175 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 174 - -
Gso16g0527 1175 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 271 389 - -
Gso16g0527 1175 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 174 293 - -
Gso16g0527 1175 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 368 1172 - -
Gso16g0527 1175 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 271 389 - -
Gso16g0527 1175 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 174 - -
Gso16g0527 1175 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 174 293 - -
Gso16g0527 1175 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 368 1172 - -
Gso16g0527 1175 Gene3D Ribonuclease Inhibitor 33 188 IPR032675 -
Gso16g0527 1175 Pfam Leucine rich repeat 724 782 IPR001611 GO:0005515
Gso16g0527 1175 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515
Gso16g0527 1175 Gene3D Ribonuclease Inhibitor 189 283 IPR032675 -
Gso16g0527 1175 Pfam Protein kinase domain 893 1165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0527 1175 SMART LRR_typ_2 459 483 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 411 435 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 171 195 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 123 147 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 99 122 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 746 768 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 603 627 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 363 387 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 507 531 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 722 745 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 291 315 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 674 697 IPR003591 -
Gso16g0527 1175 SMART LRR_typ_2 769 792 IPR003591 -
Gso16g0527 1175 SUPERFAMILY RNI-like 225 647 - -
Gso16g0527 1175 Gene3D Ribonuclease Inhibitor 493 819 IPR032675 -
Gso16g0527 1175 SUPERFAMILY Protein kinase-like (PK-like) 872 1167 IPR011009 -
Gso16g0527 1175 Gene3D Transferase(Phosphotransferase) domain 1 971 1174 - -
Gso16g0527 1175 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1016 1028 IPR008266 GO:0004672|GO:0006468
Gso16g0527 1175 Gene3D Phosphorylase Kinase; domain 1 851 970 - -
Gso16g0527 1175 SUPERFAMILY L domain-like 585 810 - -
Gso16g0527 1175 ProSiteProfiles Leucine-rich repeat profile. 748 770 IPR001611 GO:0005515
Gso16g0527 1175 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Gso16g0527 1175 PRINTS Leucine-rich repeat signature 725 738 - -
Gso16g0527 1175 PRINTS Leucine-rich repeat signature 746 759 - -
Gso16g0527 1175 SUPERFAMILY L domain-like 34 323 - -
Gso16g0527 1175 ProSiteProfiles Protein kinase domain profile. 892 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0527 Gso-Chr16 6322647 6326533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0527 649 817 Receptor kinase-like Gene Family AT4G08850 32.571 5.11e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0527 Pkinase 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0527 - - gmx:100793419 1823.91