Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso16g0526 | ATGAGTCACAACTCCTTGAATGGAACTATTCCTCCTCAAATTGGTTCCTTATCCAATCTCAACACTCTTGACTTGTCCACTAATAACCTCTTTGGTAGCATTCCCAATACCATTGGTAATCTCTCCAAACTCTTGTTTCTTAATCTTTCTGACAATGATCTCTCTGGTACTATTCCTTCTGAAATAGTACACTTGGTTGGTCTTCATACATTGCGCATAGGTGATAATAATTTCACTGGATCCCTTCCTCAAGAAATAGGTAGATTGATGAATCTGAGAATACTTGATATTCCTCGGTCCAATATCTCAGGGACTATCCCAATCTCAATAGAAAAGTTATGCAATTTGTCTCATCTAGATGTCGAAAGCAACGACCTTTCTGGCAACATTCCACTGAGAATTTGGCATATGAACCTAAAGCATTTGTCATTTGCTGATAATAACTTCAACGGTTCCATCCCCAAAGAAATTGCGAATTTGAGGAGCATCGAGACTCTCTGGCTTTGGAAAAGTGGGCTTTCTGGCTCCATTCCCAAAGAAATTTGGATGCTGAGGAATCTAACATGGCTTGACATGAGCCAATCCAGTTTCAGCGGGTCTATTCCTCGTGATATTGGGAAGTTAAGGAACCTAAAGATTCTTAATATGTCGAAAAGTGGCTTGTCTGGCTCCATGCCCGAAGAAATTTGGACGTTGCGTAATTTAGAACAACTTGACATAAGCATGTGTAATCTTATTGGGTCAATTCCTATTTCAATTGGAGCACTGGTCAATCTAACACTTCTAAGTTTACACGATAACCAACTTTTTGGTCACATTCCTCATGAAATTGGGAAGTTGGTTAACCTCCAGATTCTAGATCTCAGAAGTAATAATCTTTCTGGCTTCATTCCTCCTGAAATTGGTTTTTTGAAACAACTTGGTCAACTTGATTTGTCCATTAACTTTCTCTCTGGTGAAATCCCCTTTACAATTGGAAACTTGAGCAATTTATATGATCTTTACCTTGATTTAAACAGCCTCTCTGGAGCAATCCCAGCTTCCATAGGCAACTTGGTCAATTTGGACTCCATGATCCTTGCTGCAAATAAACTCTCTGGGTCCATTCCTTTCACCATTGGAAATTTGTCAAAGCTTAGTGTATTAACTATATCCTTTAATGAACTCACTGGATCAATTCCTTCCATTATTGGAAATTTATCAAATATCAGGGCATTAAGATTTATTGGAAATGAACTTGGTGGCAATATTCCAATAGAAATGAGCATGCTTACTGCTCTGGAAAGTTTGCAGCTAAGTCACAATAATTTTATAGGCCATTTACCTCAAAACATTTGCATTGGTGGAACGTTCAAAAAAATTTCTGCTGAAAATAACAACTTCATAGGCCCAATTCCAGTGAGTTTGAAGAATTGCTCCAGTCTTATAAGAGTCAGGCTTCAGCGAAACCAGCTAACTGGGGATATAACAGATGCTTTTGGTGTACTTCCAAATTTGGACTACATCGAATTGAGTGACAATAACTTTTATGGTCAACTATCACCTAACTGGGGAAAGTTTCGTAGCCTCACAAGCCTCATGATCTCCAACAATAATTTATCAGGTGTGATACCACCAGAACTAGCTGGGGCAACCAAATTACAACGACTTCACCTGTCCTCAAACCATCTTACAGGAAACATTCCACATGATTTATGTAACTTGCCCTTGTTTGATCTCTCACTCGACAACAATAATCTTACAGGAAATGTTCCCAAAGAAATAGCATCAATGCAGAAACTTCAAATTTTGAAGCTTGGATCAAATAAGTTGTCTGGCTTAATCCCAAAGCAACTAGGAAATTTGCTCAATTTATTGAACATGAGTCTGAGCCAAAATAATTTTCAGGGAAATATTCCTTCAGAGCTTGGCAAACTGAAATTTCTTACGAGTCTTGATCTTGGTGGAAATTCTTTGAGAGGAACAATACCTTCAATGTTTGGAGAATTAAAAGGCTTAGAAGTACTGAATGTCTCTCACAATAATCTTTCAGGTGATCTCTCTAGCTTCGATGATATGACGAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGTCCACTTCCAAACATTCTATCCTTCCACAATGCTAAAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGGAGCCTTGCTCAACATCAAGTGGGAAATCTCATAATCATATGAGGAAGAAAGTAATGATAGTAATTTTACCCCTTACTTTGGGCATTCTAATACTGGCATTATTTGCTTTCGGAGTCTCGTATCATTTATGCCAAACCTCAACGAACAAAGAAGACCAGGCTACAAGTATACAAACTCCTAACATATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTCGAGAATATTATTGAAGCCACAGAAGATTTTGACGACAAACATCTCATTGGTGTTGGAGGGCAAGGATGTGTTTACAAAGCAGTGCTGCCTACAGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCGGTTCCAAATGGAGAGATGCTCAATCTGAAAGCTTTCACATGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACAATTCTCATTTTTGGTGTGTGAATTCCTGGAGAATGGCAGTGTTGAGAAGACTCTGAAGGATGATGGACAAGCAATGGCATTTGATTGGTATAAGAGGGTGAATGTTGTTAAAGATGTAGCAATTGCTTTGTGCTATATGCACCATGAATGCTCACCTCGAATTGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCCGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTGAATGAGAAATGTGACGTGTATAGTTTTGGGGTCCTAGCATGGGAAATACTTATTGGGAAGCACCCTGGTGATGTTATATCTTCTTTATTGGGATCATCTCCATCTACTCTTGTGGCCTCAACACTCGATCTCATGGCATTGATGGATAAGTTGGACCAACGTCTCCCTCATCCAACAAAGCCAATTGGTAAGGAAGTGGCATCAATTGCAAAGATAGCAATGGCCTGCTTGACTGAAAGTCCACGATCTCGCCCTACCATGGAGCAGGTTGCCAATGAGCTGGTAATGTCAAGCTCATCTTCAATGGATTAG | 3294 | 0.391 | MSHNSLNGTIPPQIGSLSNLNTLDLSTNNLFGSIPNTIGNLSKLLFLNLSDNDLSGTIPSEIVHLVGLHTLRIGDNNFTGSLPQEIGRLMNLRILDIPRSNISGTIPISIEKLCNLSHLDVESNDLSGNIPLRIWHMNLKHLSFADNNFNGSIPKEIANLRSIETLWLWKSGLSGSIPKEIWMLRNLTWLDMSQSSFSGSIPRDIGKLRNLKILNMSKSGLSGSMPEEIWTLRNLEQLDISMCNLIGSIPISIGALVNLTLLSLHDNQLFGHIPHEIGKLVNLQILDLRSNNLSGFIPPEIGFLKQLGQLDLSINFLSGEIPFTIGNLSNLYDLYLDLNSLSGAIPASIGNLVNLDSMILAANKLSGSIPFTIGNLSKLSVLTISFNELTGSIPSIIGNLSNIRALRFIGNELGGNIPIEMSMLTALESLQLSHNNFIGHLPQNICIGGTFKKISAENNNFIGPIPVSLKNCSSLIRVRLQRNQLTGDITDAFGVLPNLDYIELSDNNFYGQLSPNWGKFRSLTSLMISNNNLSGVIPPELAGATKLQRLHLSSNHLTGNIPHDLCNLPLFDLSLDNNNLTGNVPKEIASMQKLQILKLGSNKLSGLIPKQLGNLLNLLNMSLSQNNFQGNIPSELGKLKFLTSLDLGGNSLRGTIPSMFGELKGLEVLNVSHNNLSGDLSSFDDMTSLTSIDISYNQFEGPLPNILSFHNAKIEALRNNKGLCGNVTGLEPCSTSSGKSHNHMRKKVMIVILPLTLGILILALFAFGVSYHLCQTSTNKEDQATSIQTPNIFAIWSFDGKMVFENIIEATEDFDDKHLIGVGGQGCVYKAVLPTGQVVAVKKLHSVPNGEMLNLKAFTCEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLENGSVEKTLKDDGQAMAFDWYKRVNVVKDVAIALCYMHHECSPRIVHRDISSKNVLLDSEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILIGKHPGDVISSLLGSSPSTLVASTLDLMALMDKLDQRLPHPTKPIGKEVASIAKIAMACLTESPRSRPTMEQVANELVMSSSSSMD* | 1098 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso16g0526 | 1097 | Pfam | Leucine Rich Repeat | 282 | 304 | IPR001611 | GO:0005515 | |
| Gso16g0526 | 1097 | Pfam | Leucine Rich Repeat | 546 | 568 | IPR001611 | GO:0005515 | |
| Gso16g0526 | 1097 | SUPERFAMILY | Protein kinase-like (PK-like) | 794 | 1089 | IPR011009 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 686 | 709 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 184 | 208 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 376 | 400 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 17 | 41 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 280 | 304 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 520 | 544 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 256 | 279 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 639 | 662 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 65 | 89 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 545 | 568 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 663 | 685 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 328 | 352 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 591 | 614 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 113 | 137 | IPR003591 | - | |
| Gso16g0526 | 1097 | SMART | LRR_typ_2 | 424 | 448 | IPR003591 | - | |
| Gso16g0526 | 1097 | SUPERFAMILY | L domain-like | 1 | 215 | - | - | |
| Gso16g0526 | 1097 | Gene3D | Transferase(Phosphotransferase) domain 1 | 893 | 1096 | - | - | |
| Gso16g0526 | 1097 | ProSiteProfiles | Protein kinase domain profile. | 814 | 1090 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Gso16g0526 | 1097 | Pfam | Leucine rich repeat | 642 | 699 | IPR001611 | GO:0005515 | |
| Gso16g0526 | 1097 | Gene3D | Phosphorylase Kinase; domain 1 | 773 | 892 | - | - | |
| Gso16g0526 | 1097 | Pfam | Protein kinase domain | 815 | 1087 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Gso16g0526 | 1097 | Gene3D | Ribonuclease Inhibitor | 397 | 742 | IPR032675 | - | |
| Gso16g0526 | 1097 | SUPERFAMILY | L domain-like | 503 | 727 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 1 | 69 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 63 | 190 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 287 | 1094 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 221 | 343 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 140 | 301 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 287 | 1094 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 221 | 343 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 63 | 190 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 1 | 69 | - | - | |
| Gso16g0526 | 1097 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 140 | 301 | - | - | |
| Gso16g0526 | 1097 | Gene3D | Ribonuclease Inhibitor | 175 | 396 | IPR032675 | - | |
| Gso16g0526 | 1097 | Gene3D | Ribonuclease Inhibitor | 1 | 80 | IPR032675 | - | |
| Gso16g0526 | 1097 | Gene3D | Ribonuclease Inhibitor | 81 | 174 | IPR032675 | - | |
| Gso16g0526 | 1097 | SUPERFAMILY | L domain-like | 178 | 566 | - | - | |
| Gso16g0526 | 1097 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 938 | 950 | IPR008266 | GO:0004672|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso16g0526 | Gso-Chr16 | 6280819 | 6284367 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso16g0526 | 158 | 986 | Receptor kinase-like Gene Family | AT4G08850 | 44.200 | 0.0 | 668 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Gso16g0526 | Pkinase | 7.8e-46 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso16g0526 | - | - | gmx:106794215 | 1865.89 |