Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0525 ATGGTGTTCACATTTCCAACTCTTCTGTCCATGAAGCTCCAACCACTTTCGCTGCTTCTTGTGATGTACTTCTGTGCATTTGCTACTTCTTCTGAGATTGCTTCAGAAGCAAATGCTTTGTTGAAATGGAAAGCCAGCCTTGACAACCACAGTCAAGCTTCTCTCTCTTCATGGATTGGCAATAATCCTTGCAATTGGCTTGGAATTGCATGCGATGTGTCCAGTTCTGTTTCCAACATAAATCTCACACGTGTTGGATTAAGAGGTACGCTTCAAAGTCTTAACTTCTCATTACTTCCAAACATCCTCATTCTGAATATGAGTTACAACTCCCTGTCTGGAAATATTCCTCCTCAAATTGATGCCTTGTCCAATCTCAACACTCTCGATTTGTCCACTAATAAACTCTTTGGTAGCATTCCCAATACCATTGGTAATTTGTCCAAACTACAATATCTTAATCTTAGTGCCAATGGTCTCTCTGGTCCTATTCCTAATGAAGTGGGAAATCTCAAGTCTCTTCTCACATTCGATATATTTACCAACAACCTCTCTGGACCAATTCCACCTTCCTTGGGTAACTTACCTCATTTGCAATCCATTCACATTTTTGAAAATCAACTCTCTGGATCCATTCCTTCCACTCTAGGAAATTTGTCCAAGCTCACTATGTTATCTTTATCATCAAATAAACTCACCGGGACCATTCCTCCCTCTATTGGGAATTTAACAAATGCCAAAGTGATATGTTTTATTGGAAATGATCTTAGTGGTGAGATTCCAATAGAATTGGAGAAGCTTACTGGCTTGGAATGTTTGCAGCTAGCTGATAACAATTTTATAGGCCAAATACCTCAGAATGTTTGTCTTGGTGGAAACTTGAAATTCTTCACTGCTGGTAATAACAATTTCACTGGCCAAATTCCAGAGAGTTTGAGGAAGTGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAATCTTCTATCTGGGGATATAACAGATTTTTTTGATGTACTTCCAAACTTGAACTACATCGATTTGAGTGATAATAGTTTTCATGGTCAAGTTTCACCTAAGTGGGGAAAGTTCCATAGCCTCACAAGCCTCATGATCTCCAACAATAATTTGTCAGGTGTTATCCCACCAGAACTAGGTGGAGCGTTCAACTTACGCGTACTTCACCTATCCTCAAACCATCTTACAGGAACCATTCCTCTCGAATTATGTAACTTGACCTACTTGTTTGATCTCTTAATCAGCAACAACAGTCTTTCAGGAAATATTCCCATCAAAATATCTTCCCTGCAGGAACTTAAATACTTGGAGCTTGGGTCGAATGATTTCACTGGCTTAATCCCAGGACAACTTGGAGATTTGCTCAATTTATTGTCCATGGATCTGAGCCAGAATAGATTAGAGGGAAATATTCCTTTAGAGATTGGCAGTTTGGATTATCTTACAAGTCTTGATCTGAGTGGAAATTTGTTGAGTGGAACAATACCACCAACGCTTGGAGGAATACAACACTTAGAAAGATTGAATCTCTCACACAATAGTCTTTCAGGTGGTCTCTCTAGCTTGGAAGGTATGATAAGTTTGACATCTTTTGATGTATCATACAACCAGTTTGAGGGTCCACTTCCTAACATTCTAGCCTTCCAAAATACTACAATTGATACATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCAGTGGCTTGACGCCTTGCACATTATTAAGTGGGAAGAAATCTCACAATCATATGACTAAGAAAGTCTTGATATCAGTTTTACCCCTTAGTTTGGCCATTCTGATGCTTGCATTATTTGTTTTCGGAGTCTGGTATCATTTACGCCAAAATTCAAAGAAAAAACAAGACCAGGCTACAGATTTACTATCTCCCAGGAGTCCAAGCTTATTGTTGCCAATGTGGAGTTTTGGTGGTAAAATGATGTTTGAGAATATTATTGAAGCCACAGAATATTTTGACGACAAATATCTCATTGGGGTTGGAGGGCAAGGACGTGTTTACAAAGCCTTGTTGCCTACTGGTGAACTCGTTGCTGTGAAGAAACTCCACTCAGTTCCAGATGGAGAAATGCTCAATCAGAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTACATGGGTTTTGTTCACATTCACAATACTCATTTTTGGTGTGTGAATTCCTGGAGAAGGGCGATGTCAAGAAGATTTTAAAGGATGATGAACAAGCAATTGCATTAGATTGGAATAAAAGGGTGGATATTGTTAAAGGTGTAGCAAATGCTTTATGCTATATGCACCATGATTGCTCACCTCCAATCGTTCATCGTGATATTTCAAGCAAGAACGTTCTTTTGGATTCCGATGATGTAGCTCATGTCGCAGACTTCGGAACAGCTAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCATTTGCAGGAACCTATGGATACGCTGCTCCTGAACTTGCATACACAATGGAAGCAAATGAGAAATGTGATGTGTATAGTTTTGGGGTCTTTGCGTTGGAAATATTGTTTGGAGAGCACCCTGGTGATGTTACCTCTTCTCTATTGCTATCATCTTCGTCCACAATGACCTCAACACTTGATCATATGTCATTGATGGTTAAATTGGACGAACGTCTTCCACATCCAACAAGCCCTATTGATAAGGAGGTGATATCAATTGTGAAGATAGCAATTGCTTGCTTGACTGAAAGCCCACGATCTCGCCCTACCATGGAACAGGTTGCCAAGGAGCTTGCAATGTCATCGAGGTCATCTTCAATGTCACCACAGACACACACAGAGATGAAAGACTGA 2868 0.3982 MVFTFPTLLSMKLQPLSLLLVMYFCAFATSSEIASEANALLKWKASLDNHSQASLSSWIGNNPCNWLGIACDVSSSVSNINLTRVGLRGTLQSLNFSLLPNILILNMSYNSLSGNIPPQIDALSNLNTLDLSTNKLFGSIPNTIGNLSKLQYLNLSANGLSGPIPNEVGNLKSLLTFDIFTNNLSGPIPPSLGNLPHLQSIHIFENQLSGSIPSTLGNLSKLTMLSLSSNKLTGTIPPSIGNLTNAKVICFIGNDLSGEIPIELEKLTGLECLQLADNNFIGQIPQNVCLGGNLKFFTAGNNNFTGQIPESLRKCYSLKRLRLQQNLLSGDITDFFDVLPNLNYIDLSDNSFHGQVSPKWGKFHSLTSLMISNNNLSGVIPPELGGAFNLRVLHLSSNHLTGTIPLELCNLTYLFDLLISNNSLSGNIPIKISSLQELKYLELGSNDFTGLIPGQLGDLLNLLSMDLSQNRLEGNIPLEIGSLDYLTSLDLSGNLLSGTIPPTLGGIQHLERLNLSHNSLSGGLSSLEGMISLTSFDVSYNQFEGPLPNILAFQNTTIDTLRNNKGLCGNVSGLTPCTLLSGKKSHNHMTKKVLISVLPLSLAILMLALFVFGVWYHLRQNSKKKQDQATDLLSPRSPSLLLPMWSFGGKMMFENIIEATEYFDDKYLIGVGGQGRVYKALLPTGELVAVKKLHSVPDGEMLNQKAFTSEIQALTEIRHRNIVKLHGFCSHSQYSFLVCEFLEKGDVKKILKDDEQAIALDWNKRVDIVKGVANALCYMHHDCSPPIVHRDISSKNVLLDSDDVAHVADFGTAKFLNPDSSNWTSFAGTYGYAAPELAYTMEANEKCDVYSFGVFALEILFGEHPGDVTSSLLLSSSSTMTSTLDHMSLMVKLDERLPHPTSPIDKEVISIVKIAIACLTESPRSRPTMEQVAKELAMSSRSSSMSPQTHTEMKD* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0525 955 SMART LRR_sd22_2 483 509 - -
Gso16g0525 955 SMART LRR_sd22_2 123 149 - -
Gso16g0525 955 SMART LRR_sd22_2 219 245 - -
Gso16g0525 955 ProSitePatterns Tyrosine protein kinases specific active-site signature. 787 799 IPR008266 GO:0004672|GO:0006468
Gso16g0525 955 Gene3D Ribonuclease Inhibitor 32 182 IPR032675 -
Gso16g0525 955 Pfam Protein kinase domain 665 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0525 955 SUPERFAMILY Protein kinase-like (PK-like) 639 936 IPR011009 -
Gso16g0525 955 Gene3D Transferase(Phosphotransferase) domain 1 742 954 - -
Gso16g0525 955 MobiDBLite consensus disorder prediction 927 955 - -
Gso16g0525 955 Gene3D Ribonuclease Inhibitor 290 584 IPR032675 -
Gso16g0525 955 Gene3D Ribonuclease Inhibitor 183 289 IPR032675 -
Gso16g0525 955 Pfam Leucine Rich Repeat 389 411 IPR001611 GO:0005515
Gso16g0525 955 PRINTS Leucine-rich repeat signature 486 499 - -
Gso16g0525 955 PRINTS Leucine-rich repeat signature 507 520 - -
Gso16g0525 955 ProSiteProfiles Leucine-rich repeat profile. 389 410 IPR001611 GO:0005515
Gso16g0525 955 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 162 - -
Gso16g0525 955 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 144 942 - -
Gso16g0525 955 SUPERFAMILY L domain-like 285 557 - -
Gso16g0525 955 ProSiteProfiles Protein kinase domain profile. 663 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0525 955 SMART LRR_typ_2 459 483 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 363 387 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 389 411 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 195 218 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 123 146 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 147 171 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 267 291 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 219 243 IPR003591 -
Gso16g0525 955 SMART LRR_typ_2 435 458 IPR003591 -
Gso16g0525 955 Gene3D Phosphorylase Kinase; domain 1 637 741 - -
Gso16g0525 955 SUPERFAMILY L domain-like 71 381 - -
Gso16g0525 955 Pfam Leucine rich repeat 486 543 IPR001611 GO:0005515
Gso16g0525 955 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Gso16g0525 955 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 162 - -
Gso16g0525 955 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 144 942 - -
Gso16g0525 955 MobiDBLite consensus disorder prediction 935 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0525 Gso-Chr16 6247539 6262722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0525 13 835 Receptor kinase-like Gene Family AT4G08850 42.105 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g0525 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0525 - - gmx:100784831 1683.31