Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0519 ATGGAGAACAAAAGAATGGTGGCGAATGAAGAACAGAGGCGCAGCCCCAGAAACCAGAAGGTCCCATTAACTGATTCCAATGGCCAAAACATGGCAACCCTTTTTAGCCCAAGGTTCAAATCCGCGGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCTAGCCTCATCGTTGAAGACACGCCAGATAGAGATCCCAAGCACAAGAAGCGCTATGTTTTGCACTCCAAAACCCCACCAAACTCATCAAGAGCTCAGAGGAGTCCACAAGCTCCAATCCCTGTAGTACTTGATCTTGATGCAGAAGAAACTCCCAAAATAGATAGTGGGAGAAAGAAGAAAGAAAAGAAAGCTTGTGTTGAGAATGAGGGAAAGAAAGCGTGTGTTGAGAATGAGGGAAGCAAAGTAGGAGAGGGTGGTAATGAATCGAAAGAGAAGAACCCAGGTGACGCTTCATCTAGTTCTTCTCTTCCCTGCATTGATAAACTAAGGGATGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCAAAATGCAGGCAATTAATCAGCAATGGAAGATCATGCACTGTGAACACAGTTCTCTGGAACACAATCCAGCTCCTGTTTCCACAAGAAGTTGAAGCAAGAAAAGAAGCTAGTGCCTTGAATAGTCGCCAACAAGCTCAAAACCTGAGTCCAGAGTCAGCATTTTTTGCTTACCTAAGGAACGACACACAACCTTTAAGGGTGGCATCAAGCAGAAGCACGAATTCAATGAGGAGTGGGACAACAGCAACAACAACAACAACAACAACAACAACAACATCAACACAGGAAAATGAGGATGCTGCATTGGCTAGAATGTTGCAGAGAGAAATTGATGAGCAAAGAAGCCTAGGAACGACTCGAACTCGGTTGGCGAGATTGAGGGCAAGAAGAGGAGGAAGAGGGGTTTCTACTAGCCAACATGAGGATGCAGCTTTAGCTCTAAGGATGCAGAGAGAAGAGTTCATGCAAACTTATAGAGGGAGCAGCCAGGAACAGTCTAGCAGGCTAACCTCAACATCATTAGCTAGAGAAAATTTGAGGGCTATGGCATCTAGAGCCATGAACAGAAGAAGGTGA 1197 0.4536 MENKRMVANEEQRRSPRNQKVPLTDSNGQNMATLFSPRFKSAAAMAGWDEEALLLASLIVEDTPDRDPKHKKRYVLHSKTPPNSSRAQRSPQAPIPVVLDLDAEETPKIDSGRKKKEKKACVENEGKKACVENEGSKVGEGGNESKEKNPGDASSSSSLPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKEASALNSRQQAQNLSPESAFFAYLRNDTQPLRVASSRSTNSMRSGTTATTTTTTTTTTSTQENEDAALARMLQREIDEQRSLGTTRTRLARLRARRGGRGVSTSQHEDAALALRMQREEFMQTYRGSSQEQSSRLTSTSLARENLRAMASRAMNRRR* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0519 398 MobiDBLite consensus disorder prediction 273 348 - -
Gso16g0519 398 MobiDBLite consensus disorder prediction 133 147 - -
Gso16g0519 398 MobiDBLite consensus disorder prediction 309 325 - -
Gso16g0519 398 ProSitePatterns Zinc finger RING-type signature. 186 195 IPR017907 -
Gso16g0519 398 MobiDBLite consensus disorder prediction 1 18 - -
Gso16g0519 398 SUPERFAMILY RING/U-box 163 234 - -
Gso16g0519 398 MobiDBLite consensus disorder prediction 133 158 - -
Gso16g0519 398 MobiDBLite consensus disorder prediction 365 384 - -
Gso16g0519 398 PANTHER - 22 252 - -
Gso16g0519 398 PANTHER - 342 396 - -
Gso16g0519 398 MobiDBLite consensus disorder prediction 64 118 - -
Gso16g0519 398 MobiDBLite consensus disorder prediction 1 32 - -
Gso16g0519 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 240 IPR013083 -
Gso16g0519 398 ProSiteProfiles Zinc finger RING-type profile. 171 210 IPR001841 -
Gso16g0519 398 MobiDBLite consensus disorder prediction 103 118 - -
Gso16g0519 398 PANTHER UNCHARACTERIZED 22 252 - -
Gso16g0519 398 PANTHER UNCHARACTERIZED 342 396 - -
Gso16g0519 398 SMART ring_2 171 209 IPR001841 -
Gso16g0519 398 MobiDBLite consensus disorder prediction 273 307 - -
Gso16g0519 398 Pfam Zinc finger, C3HC4 type (RING finger) 171 209 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0519 Gso-Chr16 6168978 6171763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0519 163 261 C2H2 Transcription Factor Family AT5G39550 32.353 2.38e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0519 - - gsj:114390146 726.857