Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0516 ATGGTCGTGAGTGGTTCCTCCCCACTAACTTCGAAGAGGAGAAGGGTCACCAACTTTTGTTCCACCGACATGGACGCTGAAACTGCTAAGGCCAAGCTTGCTGCTGTGAAAGAAAGATTTGGACGAGAGATCCATGTTTTTGAAACATCAGTTCTTTCTTCATCTTCAAAGGCTGCGTTATCCAATGAAGGAGAGGAGACGGATGACTTCTATGAGTTTACTGCTGAAGATTATTACAGACTTTTGGCTACTAAAAGAGAAGATAAATTCTTGAAGACTCGAAAACTACGAGAAGCAGAAGAGGCAGCTCGTAGGTCAAGAATAACCAAAGCTGTAATCAGAATTCGCTTCCCTGATAATCACACTTTGGAGGCTACATTCCACCCATCCGAAACAATCCAGAGTTTAATTGATCTCCTCACTAAAGTTATTGCACAACCAGAGCAACCATTCTATATATACACTACTCCGCCTAAGAAGGTGATCAATGATATGTCTCTGGATTTTTACACTGCTGGCTTTTGTCCTGGTGCCATTGTGTACTTCTCATACAATGTCCCAAAAGGTGATAGCACTGTGGGTGACCATACTAGTCCTTATCTCCAAGAAGATATCTTGTCTTTAAAGGATTTGCACATTGCAATTGATCAAGGCCAGCAATCTGAGCCTGTAGTACAGCCAGACCCTGAACCTACCGTAGCAGCACACCCCCCTCCTGTTGAAGAACGCAAACCCACCGAGAAAAAGGTTGTTAAACCAAAGTGGCTAAAAATGTGA 777 0.4324 MVVSGSSPLTSKRRRVTNFCSTDMDAETAKAKLAAVKERFGREIHVFETSVLSSSSKAALSNEGEETDDFYEFTAEDYYRLLATKREDKFLKTRKLREAEEAARRSRITKAVIRIRFPDNHTLEATFHPSETIQSLIDLLTKVIAQPEQPFYIYTTPPKKVINDMSLDFYTAGFCPGAIVYFSYNVPKGDSTVGDHTSPYLQEDILSLKDLHIAIDQGQQSEPVVQPDPEPTVAAHPPPVEERKPTEKKVVKPKWLKM* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0516 258 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 7 258 IPR044232 GO:0032984|GO:0051117
Gso16g0516 258 MobiDBLite consensus disorder prediction 240 258 - -
Gso16g0516 258 SUPERFAMILY Ubiquitin-like 86 182 IPR029071 -
Gso16g0516 258 ProSiteProfiles UBX domain profile. 106 182 IPR001012 GO:0005515
Gso16g0516 258 Gene3D - 100 183 - -
Gso16g0516 258 CDD UBX2_UBXN9 111 184 - -
Gso16g0516 258 Pfam UBX domain 109 165 IPR001012 GO:0005515
Gso16g0516 258 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1-RELATED 7 258 - -
Gso16g0516 258 MobiDBLite consensus disorder prediction 217 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0516 Gso-Chr16 6130290 6134528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0516 22 139 C2H2 Transcription Factor Family AT2G01650 26.230 3.45e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0516 K15627 - gmx:100792947 494.197