Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0505 ATGTCACTCATTATCTGCTTCTTTGTCCTGCAATTGTTAACATGGTCAAGGGTGCTTCTAGCTCATGAAAGTAGAAACAACTGCTCAAGGTCCATTATGAGCATAGGTGCTGTGCTTGATTTGAGTTCACAAATGGGAAAGCATCAGAAGATAGCCATGCAAATTGCACTCCAAGAGTTCAATCGGTTGAGTTGTTCCAAGCTGGATTTGAAGATTGAAAATTCCCATGGGAATTCAGCTCACGCAGTTGCTAGTGCCATGGATCTCACCCAGAGCAAGCAAGTGTTAGCCATCATAGGCACAATAACACACAGTGAAGCAAATCTGGCAAGTGAATTTGATGACACCATAAAAAATATTCCTATCTTGTCTCTAATTTCACCTGTAGCCAGATCAGAGAAATCATCTCCTCTATTGCCATACTTCATCCAAGAGGGATATGATATCAACCTTCACATGCAATGCATTGCAGCCATTGTGGGAGAATTCAGATGGCGAAAGGTGACAGTAATCTATGAACTTGATAACTGGTTTTCCTCTGATCCAGGGATTCTACTCGACCTCTCCTATTCCCTTAGACTTGTTGGATCAGAGATTGATAATCATGTAGCGTTGCCTTCCTTATCCTCTCTATTAGATCCAAAATCTACCATTGAAAATGAGCTTAATAGGCTCAAAAACAAAAGTAACAGGGTCTTCTTGATTGCGCACTCTTCTTTAGAGCTGGCAAACATACTTTTTGAGAAAGCAAAGCAAATGAGTTTAGTGGGAAAAGGTTCTGTGTGGGTTATCCCAGATGGGGTTGCTGGCCTACTTGATTCAGTTAACTCTTCTTCAATCCTTAACATGCAGGGTGTTATTGGATTTAAGACACATTTCATGGAAACAAGCAAAGCATTTAGAAGGTTCAAATTCAAATTCCGAAGAAGGTTTGTACTGGAGTTCCCTGAAGAAGAGAACATTAACCCAAGTTTCTTTGCACTTCAATCATATAAAGCAACCCGGGCAGTTGCTCAAGCTGCAAGGGAATCGCAAGGGAAGTTAACCCTTGAACAATTATTCAAAAGTAATATATCCAGAAATGGCAAATTTTGGCAATCACAAACCTTCAATATAATTAATGTGATAGGTAAAAGTTACAGAGAGTTAGCATTATGGTCTCCAGAACTAGGTTTCTCCAAAAACCTTATTACACAGCAGCTGACAGAGATGAACACAAATAGTGCTTCTAGTGGAATTTTGAGTACTGTTTATTGGCCTGGAGGTATACAATTTGTTCCTAAGGGATGGACTCACAGCACCGAACAAAGAAAATTGCAAATAGGAGTGCCTGCAAAAGGTGCCTTCACTGAGTTTGTGAATGTGACATATGATAAGAACAGGAATAAAACTTCTATCACAGGATTCTCAATCGATGTCTTTAAAGAAGCCGTTCATAATTTGTCTTATGACTTGGACTTTGCGTTTGTTCCCTTTAATGGGTCTTATGATGAAATGGTAGAGCAAGTCTATAACAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCATACAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGACTCTGGTATTGACATGGTGGTTACAGAGCAATCAGCTAAATCAAAAGAAACATGGATCTTTTTAAAAGCCTTCACAAAAGGGATGTGGTTGATGATGGCAGCATTACACATTTTCGTAGGATTTGTCATTTGGTTGATCGAAAGGCAAGTTAATGAAGAACTAAAAGGATTCGGGTCCATGCTTTGGTTCTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATTAGAAGCCCCTTGGCTCGAACTGTGCTGGCACCATGGTTATTTGTTATCCTAATTGCAACTAGTACTTTCACAGCAAGTTTGACTTCCATGATGACTGTTTCACAACTAGAGCCATCTGTGTTAGATATCAAGAGCCTTCTGAAGAGAAATTCTCCAGTTGGTTGTAATGGAAATTCGTTCATTGTAAAGTATTTGACTGAGGTACAAAAATTCAAACCTGAGAACATTAGGAGAATTAACTCCATAAATGATTACCCTTCAGCCTTTCAGAACAAGGATATCGAAGCAGCTTTCTTTATTGCGCCTCACGCTAAGGTATTTATGGCAAAGTACTCATGCAGGGGTTTCATCAAAGCAGGGAACACTTTCAGGCTTGGTGGCTTAGGTTTTGTATTTCCCAAGGGTTCCACTTTGGCTACTGACATATCCGAGGCATTGCTGAAAGTGCTAGAGAGTGGGGAAATTGAACAGCTTGAAAAAGATATGCTAACCATAGAAGGCAATGCCAGTTGTTCTCCTTTAGAGAGCAAGGCAAAAGATGGGTCACCGACAGGATTTCAGCCTTTTCTTGGCCTATTTTGCATCTGTTCAATTGTTGCTGTTCTGGCATTGTTATATAATATGATTTGTTTGTTGATGAGTAATGTATTGACCTTCACTAGCTACATACATCTAACATTAACACAATTAAGGAGAATATGGAGATGGACAACCAGATATTTTGCTCGGAGCAGTTCAAGGTTCCAATCAGGAAGTTTGAGAAGTGTGAGTACAGCCACAGTAACAAGAAATGCAGAGGAGACAGTCATTAATACTCAGTGA 2649 0.3968 MSLIICFFVLQLLTWSRVLLAHESRNNCSRSIMSIGAVLDLSSQMGKHQKIAMQIALQEFNRLSCSKLDLKIENSHGNSAHAVASAMDLTQSKQVLAIIGTITHSEANLASEFDDTIKNIPILSLISPVARSEKSSPLLPYFIQEGYDINLHMQCIAAIVGEFRWRKVTVIYELDNWFSSDPGILLDLSYSLRLVGSEIDNHVALPSLSSLLDPKSTIENELNRLKNKSNRVFLIAHSSLELANILFEKAKQMSLVGKGSVWVIPDGVAGLLDSVNSSSILNMQGVIGFKTHFMETSKAFRRFKFKFRRRFVLEFPEEENINPSFFALQSYKATRAVAQAARESQGKLTLEQLFKSNISRNGKFWQSQTFNIINVIGKSYRELALWSPELGFSKNLITQQLTEMNTNSASSGILSTVYWPGGIQFVPKGWTHSTEQRKLQIGVPAKGAFTEFVNVTYDKNRNKTSITGFSIDVFKEAVHNLSYDLDFAFVPFNGSYDEMVEQVYNKTLDAAVGDTSIMAYRYHLVDFSQPYVDSGIDMVVTEQSAKSKETWIFLKAFTKGMWLMMAALHIFVGFVIWLIERQVNEELKGFGSMLWFLVTVIFYAHREPIRSPLARTVLAPWLFVILIATSTFTASLTSMMTVSQLEPSVLDIKSLLKRNSPVGCNGNSFIVKYLTEVQKFKPENIRRINSINDYPSAFQNKDIEAAFFIAPHAKVFMAKYSCRGFIKAGNTFRLGGLGFVFPKGSTLATDISEALLKVLESGEIEQLEKDMLTIEGNASCSPLESKAKDGSPTGFQPFLGLFCICSIVAVLALLYNMICLLMSNVLTFTSYIHLTLTQLRRIWRWTTRYFARSSSRFQSGSLRSVSTATVTRNAEETVINTQ* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0505 882 Gene3D - 23 148 - -
Gso16g0505 882 Gene3D - 736 769 - -
Gso16g0505 882 SMART GluR_14 438 774 IPR001320 GO:0015276|GO:0016020
Gso16g0505 882 Pfam Receptor family ligand binding region 50 352 IPR001828 -
Gso16g0505 882 SUPERFAMILY Periplasmic binding protein-like II 414 769 - -
Gso16g0505 882 Gene3D - 431 556 - -
Gso16g0505 882 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 838 - -
Gso16g0505 882 CDD GluR_Plant 437 772 - -
Gso16g0505 882 Gene3D - 648 735 - -
Gso16g0505 882 Gene3D - 149 322 - -
Gso16g0505 882 Pfam Bacterial extracellular solute-binding proteins, family 3 463 769 IPR001638 -
Gso16g0505 882 PIRSF IGluLR_plant 347 881 IPR017103 -
Gso16g0505 882 PIRSF IGluLR_plant 1 363 IPR017103 -
Gso16g0505 882 PANTHER GLUTAMATE RECEPTOR 30 838 - -
Gso16g0505 882 Pfam Ligand-gated ion channel 770 807 IPR001320 GO:0015276|GO:0016020
Gso16g0505 882 SUPERFAMILY Periplasmic binding protein-like I 30 430 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0505 Gso-Chr16 5970603 5976305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0505 86 814 Ion Channels AT5G11210 34.137 9.87e-123 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0505 - - gmx:100778941 1712.58