Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0504 ATGGTAAGGACTTCTCCAATGTCACTAACTATCTTGTTCTTTGTCTTGCAATTGTTTGCATGGTCATCAAGGGTACTACTAGCTAGTGAAAAAATAAACAACTGCATAAGCACTACTTCAAGGCCCATTATGATGAAAATCGGTGCTGTTCTTGATTTGGATTCACTAGTGGGCAAGCAACAAAAAATCGCCATGGAAATTGCAGTCCAAGAGTTCAATAGCTTGAGTTGCTCCAAGCTGGATTTGAATATACAAAATTCCCGTGGGATTTCTGCTCGAGCAATTGCTAGTGTTATGGATCTCACACAGAGCATGCGGGTGCTAGCTATCATAGGAACAATAACACACAATGAAGCAACTCTGGCAAGTGAGTTAAATTACACCATAAACAAGGTTCCTACATTGTCTCTAACTTCTCCAACAGCAAGGACAAAGTTATTATCTCCTCAATTGCCACACTTCATCCAAATTGGCGATGATGTCAGGATTCACATGCAATGCGTTGCAGCCATAGTAGGAGAATTCAGATGGAAAAAGGTGACAGTAATCTATGAACTTAATAATTGGCTTTCCTCTGATCCAGGGATGCTACTTGACCTCACCTATGCTCTTAGACAAGTTGGTTCTGAGATTGACAATCATTTAGCTTTGCCTTCCTTGTCCTCTCTATCAGACCCAAAATCAAACATTGAAAATGAGCTTAAAAAGCTCAAAAGCAAAAGTAACAGGGTCTTCTTGATTGTGCATTCTTCTTTAGAGCTGGCTAACATACTTTTTGAGAAAGCAAAGCAAATAGGTTTGATGGAAAAAGGTTCTGTGTGGGTTATATCAGATGGGGTTGTTGGCCTTCTTGATTCAGTTAACCCATCTGCTATCTCTAACATGCAGGGAGTAATTGGGTTTAAGACAAACTTCATGGAAGTGAGTGAGACATTTAGACAGTTCAAATTCAAATTTCAAAGAAACTTTGCCTCGGAGTTCCCCGAGGAAGAGAAAATTAATCCAAGTTTCTTCGCACTTCAATTGTACGATGCAACCTGGGCGATTGCACAGGCTGCAAAGGAATCACAAGGGAAGTTTACTCCTGAACAATTGTTCAAAAATTACCTCTCCAGGAATGACAAATTACAGCAATCACCAACCTTCAATATAATTAATGTGATAGGTAAAAGTTATAGAGACTTGGCATTATGGTCTCCAAAACTAGGTTTCTCCAAGAACCTTATTACACAGCAGCTAACAGAGGTGAACACAGATACTACTTCTACTAAAGTTTTGAGTACTGTTTATTGGCCTGGAGGCTTACAGTTTGTTCCTAAGGGATCGACTCGCAGCACCGAGGAGAGAACTCTGCAAATAGGAGTGCCTGCAAATGGTGTCTTTCGTCAGTTTGTGAATGTGACACATGATCAGAACACAAATAACACTTCTATAACTGGTTTCTCAATTGATGTCTTTAAAGCTGTTGTTAATACTTTGCCTTATGACTTGAAATACACGTTTGTTCCCTTCAATGGGTCTTATGATGAAATGGTAGAGCAAGTCCACAATAAGACATTGGATGCTGCTGTAGGAGACACAGCAATAATGGCATATAGATATCATTTAGTCGACTTCACACAACCTTACATTGAATCTGGCCTTGACATGGTGGTTAAAGAGAAATCAGCAAAATCAAAAGAAACATGGATTTTTTTGGATGTATTTACAAAAGAGATGTGGTTGATGATAGTTGCATTGCACATTTTTGTGGGATTTGTTATTTGGTTCATAGAACGGCGACACAATGCAGAACTAAAAGGATTGGGGTCCATGCTTTGGTTTCTAGTCAGCGTGATATTCTATGCACACAGAGAACCAATTACAAGCCCCCTGGCTCGAACTGTGTTGGCACCATGGCTATTTGTTATACTCATTGCAACTAGTACATTCACAGCAAGTTTGACTTCCATGATGACTGTTTCGCAACTAGAGCCATCTGTGTTAGATATCCAAACCCTTCAGGAAAGAAATTCCCCTGTCGGTTGTAATGGAAATTCGTTCATTGTGAAGTACCTGATTGACATACTAAAATTCAAGCCTGAGAACATCAAGAAAATTAACTCTATAGGTGATTACCCTGCTGCGTTTCAGAACAAGGATATTGAAGCCGCTTTCTTTGTTACCCCTCATGCTAAAATCTTTCTGGCAAAGTACTCGTGCAAGGGCCTCATCAAAGCAGGGAGCACGTTCAAGCTTGGTGGTTTTGGTTTTGTTTTTCCCAAGGGTTCGACTTTGGCTACTGACTTATCCGAGGCATTGCTGAAAGTGATAGAGAAACGAGAAACAGAACAACTAGAAAAAGATATGCTATTGATAGGAGGCAATGCCAATTGCTCTCCTTCCGAGAGCAAGGCAAAAGGTAGGTCATCAACAGGATTTCAGCCTTTCCTTGGCCTATTTTTAATCTGTTCTTCTGTTGCTATTCTGGCATTGTTATATAATATGATTTGTGTGTTCAAGATTAGTGTAGAGATCTTCTCTAGCTACATGCATGTAACATTAACAAAATTAAAGAGTATGTGGAGATGCACAACCACATGTTTTACTTGGAGCTGTTCAAGACTCCAATCAGGGAGTATGAGAAGTATTAGTACTGCCACAGTAACAAGAAATGCCGAGGAGACTGTCATTAGTGATCAGCAAAGCACAATGAATGTTGAGCTTATTGATGTAGTATTGGCTGCTCATGCTTCGTGA 2739 0.3987 MVRTSPMSLTILFFVLQLFAWSSRVLLASEKINNCISTTSRPIMMKIGAVLDLDSLVGKQQKIAMEIAVQEFNSLSCSKLDLNIQNSRGISARAIASVMDLTQSMRVLAIIGTITHNEATLASELNYTINKVPTLSLTSPTARTKLLSPQLPHFIQIGDDVRIHMQCVAAIVGEFRWKKVTVIYELNNWLSSDPGMLLDLTYALRQVGSEIDNHLALPSLSSLSDPKSNIENELKKLKSKSNRVFLIVHSSLELANILFEKAKQIGLMEKGSVWVISDGVVGLLDSVNPSAISNMQGVIGFKTNFMEVSETFRQFKFKFQRNFASEFPEEEKINPSFFALQLYDATWAIAQAAKESQGKFTPEQLFKNYLSRNDKLQQSPTFNIINVIGKSYRDLALWSPKLGFSKNLITQQLTEVNTDTTSTKVLSTVYWPGGLQFVPKGSTRSTEERTLQIGVPANGVFRQFVNVTHDQNTNNTSITGFSIDVFKAVVNTLPYDLKYTFVPFNGSYDEMVEQVHNKTLDAAVGDTAIMAYRYHLVDFTQPYIESGLDMVVKEKSAKSKETWIFLDVFTKEMWLMIVALHIFVGFVIWFIERRHNAELKGLGSMLWFLVSVIFYAHREPITSPLARTVLAPWLFVILIATSTFTASLTSMMTVSQLEPSVLDIQTLQERNSPVGCNGNSFIVKYLIDILKFKPENIKKINSIGDYPAAFQNKDIEAAFFVTPHAKIFLAKYSCKGLIKAGSTFKLGGFGFVFPKGSTLATDLSEALLKVIEKRETEQLEKDMLLIGGNANCSPSESKAKGRSSTGFQPFLGLFLICSSVAILALLYNMICVFKISVEIFSSYMHVTLTKLKSMWRCTTTCFTWSCSRLQSGSMRSISTATVTRNAEETVISDQQSTMNVELIDVVLAAHAS* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0504 912 SUPERFAMILY Periplasmic binding protein-like I 45 441 IPR028082 -
Gso16g0504 912 SUPERFAMILY Periplasmic binding protein-like II 425 781 - -
Gso16g0504 912 Gene3D - 443 562 - -
Gso16g0504 912 CDD PBP1_GABAb_receptor_plant 46 408 IPR044440 -
Gso16g0504 912 Pfam Receptor family ligand binding region 62 358 IPR001828 -
Gso16g0504 912 Gene3D - 563 696 - -
Gso16g0504 912 Gene3D - 165 335 - -
Gso16g0504 912 PANTHER GLUTAMATE RECEPTOR 40 857 - -
Gso16g0504 912 PIRSF IGluLR_plant 359 903 IPR017103 -
Gso16g0504 912 PIRSF IGluLR_plant 7 377 IPR017103 -
Gso16g0504 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 857 - -
Gso16g0504 912 SMART GluR_14 450 782 IPR001320 GO:0015276|GO:0016020
Gso16g0504 912 CDD GluR_Plant 449 784 - -
Gso16g0504 912 Pfam Bacterial extracellular solute-binding proteins, family 3 474 781 IPR001638 -
Gso16g0504 912 Gene3D - 42 164 - -
Gso16g0504 912 Pfam Ligand-gated ion channel 782 817 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0504 Gso-Chr16 5947867 5954721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0504 101 826 Ion Channels AT5G11210 32.992 2.73e-115 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0504 - - gmx:100777873 1727.99