Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0490 ATGGTGTCCTTTCTCCCTTTGAAATTGGTAGCTAAGTTTGATGTTCACATTCACAAAGTTTGGTGCCTAATAATGCTCAGAGTTGGTTCGATGAGATACTTTTACCTCTATCTTGTGGTTCTTACTTGGTTTTTGTCCATCCCCAGTACTCATGAACTACAACTTGCTCAGACCCAAGTTCTGTTACAGTTAAGAAAGTATCTGGAGTACCCTACCTCTCTGCAAATGTGGGAAAATTACAATGTAGACCTTTGTAGCCTTCCTCCATCTGCACATGTGAGCCTCAAGTGTGAGGGTAATTCAGTAACTGAGCTTAAAATTATGGGAGATAGAGCTGTGAAGGTTGACAAGTTCAATGGACATGCAGTTCCCAATCAGACACTGTCACTGAGCTTCTCTATTGATTCTTTTGTCACCACATTGACAAGGCTAACAAACTTAAGGGTCCTTAGATTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAAATTCATAGGCTTTCTTTGCTTGAAGTTTTGGATATGAGCTTAAACTTCTTATATGGTTCAGTGCCACCAAAAATGTCTGCAATGGTCAAGCTTCATACTCTGACACTAGATGGCAATTATTTCAACAGCACAATGCCTGATTGGTTTGATTCTTTGTCTAATCTAAGTGTCTTGAGTTTGAAGAGTAACCACTTAAAGGGTTCATTCCCTTCTACACTATGCAAAATTAGGAGTCTTGTTGATATTTCCTTGTCCCACAATGAGTTGTCTGGTGGATTGCCTGATCTCGCTGCTCTCTCTGGCCTACATGTACTTGATTTAAGGGAAAATCATTTAGATTCTGAACTGCCACTCATGCCTAAAGCAGTGGTCACAATTCTGCTTAGCAAAAATTCTTTTTCGGGTGAGATACCAAATCACTTTAGTGAATTGAGTCATCTTCAGCATCTAGATCTTTCATCAAATCATCTCAGTAAGATGCCCCCATCTTCCTTGTTCTCTTTGCCAAACATTAGCTATTTGAATTTAGCCAGTAATGAGCTAAGTGGATCCCTTCCACAGAAACTAAACTGTGGCAGCAAACTTGGGTTTGTGGATATCTCTAGTAACAAGTTAAATGGTGGACTTCCTTCTTGCTTGGCCAATACATCGGGTAAAAGAGTTGTTAAATATGGTGGAAACTGTTTAGCTGTTGATTCTCAACCTCAGCGGCGAGGGACTTATTGTAAAGTATCAAGCTCGGGAAGGAAAAACTTCTGGAAATGGAAAATAGCTGCAGCAGTTGCCATGATTATTGTAATTGTTCTTGTACTTTCTGCTTTTGGAGTTTTCTTTTATAGAAAATATCGTTCAAGGAAGATCTATAGGCATCAGATGTTGTCTAAGGCTGTTCAAGATAACTCAATAACAGGAGTTTCTTCTGAAGTCCTTGCCAGTGCTAGATTCATTTCTCAAGCAGCGAAGCTAGGGACACAAGCTACTCCAATACGTAGACAATTTTCAATTGAAGAGTTGAAAGAAGTCACAAGAAACTTTGATTTGTCAACTTATATTGGTGAAGGCTCCTTAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGAACCTATGTGGTGATAAGACGTGTGGCTCTGTCAAAGAAATGCTCAATACAAAATCTTAAAGCTGGGTTGGATTTACTCTCAAAGCTTCACCATCCAAATTTGGTTAGCCTTTTTGGTCATTGTATTGATGGTGATGGACAAGATGATTCCAGTGGCCTCAAACTTCATCTTGTATATGAGTATGTGCCGAATGGGAAATATGGTACCCATTTGTCAGAATTTTCATCAGACAAGGCACTGAAGTGGTCTGATAGATTAGCAATTTTAATCGGAGTTGCCAAAGCTGTGCACTTTTTACATACCGGAGTTATACCGGGTTGTTTTAGAAACCAATTAAAGACAAACAATATTTTACTTGATGAGCATCACATTCCCAAACTAAGTGACTATGGTATGTCCATCATTGCTGAGGAGATCGAATACCTTGAGGCAAAGGGAGAAAATCTAAAATCATGCCAAAGAGCAAAATTAGAAGATGATGTCTATAATTTCGGGTTGATACTGTTTGAATCTCTTGTTGGACCCATAGCAAGCGAGAAAGGAGAGAAATATTTTCTTGATGAAAAGACATCCTTTGACAGTCAAGATGGCAGAATTAAAATAGTGGATCCTGTAGTGTTGACCACTTGCTGTCCAGAGTCATTATCAATTGCAATATCCATCACAACCAAATGCATATCCCGTGAATCCTCACCTCCTCCTTCTTTTGAGGATGTCTTATGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGAACAAAAACCAGATTCTACATCCTAA 2385 0.3954 MVSFLPLKLVAKFDVHIHKVWCLIMLRVGSMRYFYLYLVVLTWFLSIPSTHELQLAQTQVLLQLRKYLEYPTSLQMWENYNVDLCSLPPSAHVSLKCEGNSVTELKIMGDRAVKVDKFNGHAVPNQTLSLSFSIDSFVTTLTRLTNLRVLRLVSLGIWGPLPDKIHRLSLLEVLDMSLNFLYGSVPPKMSAMVKLHTLTLDGNYFNSTMPDWFDSLSNLSVLSLKSNHLKGSFPSTLCKIRSLVDISLSHNELSGGLPDLAALSGLHVLDLRENHLDSELPLMPKAVVTILLSKNSFSGEIPNHFSELSHLQHLDLSSNHLSKMPPSSLFSLPNISYLNLASNELSGSLPQKLNCGSKLGFVDISSNKLNGGLPSCLANTSGKRVVKYGGNCLAVDSQPQRRGTYCKVSSSGRKNFWKWKIAAAVAMIIVIVLVLSAFGVFFYRKYRSRKIYRHQMLSKAVQDNSITGVSSEVLASARFISQAAKLGTQATPIRRQFSIEELKEVTRNFDLSTYIGEGSLGKLYKGKLENGTYVVIRRVALSKKCSIQNLKAGLDLLSKLHHPNLVSLFGHCIDGDGQDDSSGLKLHLVYEYVPNGKYGTHLSEFSSDKALKWSDRLAILIGVAKAVHFLHTGVIPGCFRNQLKTNNILLDEHHIPKLSDYGMSIIAEEIEYLEAKGENLKSCQRAKLEDDVYNFGLILFESLVGPIASEKGEKYFLDEKTSFDSQDGRIKIVDPVVLTTCCPESLSIAISITTKCISRESSPPPSFEDVLWNLQYAAQVQATADAEQKPDSTS* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0490 794 SUPERFAMILY L domain-like 60 395 - -
Gso16g0490 794 Pfam Leucine rich repeat 289 345 IPR001611 GO:0005515
Gso16g0490 794 Pfam Leucine rich repeat 194 253 IPR001611 GO:0005515
Gso16g0490 794 Pfam Protein tyrosine and serine/threonine kinase 511 701 IPR001245 GO:0004672|GO:0006468
Gso16g0490 794 ProSiteProfiles Protein kinase domain profile. 509 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0490 794 Gene3D Phosphorylase Kinase; domain 1 471 592 - -
Gso16g0490 794 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 34 793 - -
Gso16g0490 794 PANTHER OS07G0166700 PROTEIN 34 793 IPR045272 GO:0004714|GO:0006468
Gso16g0490 794 SMART LRR_typ_2 332 356 IPR003591 -
Gso16g0490 794 SMART LRR_typ_2 263 286 IPR003591 -
Gso16g0490 794 SMART LRR_typ_2 216 239 IPR003591 -
Gso16g0490 794 SMART LRR_typ_2 308 331 IPR003591 -
Gso16g0490 794 SMART LRR_typ_2 192 215 IPR003591 -
Gso16g0490 794 Gene3D Transferase(Phosphotransferase) domain 1 594 793 - -
Gso16g0490 794 SUPERFAMILY Protein kinase-like (PK-like) 492 774 IPR011009 -
Gso16g0490 794 Gene3D Ribonuclease Inhibitor 286 411 IPR032675 -
Gso16g0490 794 Gene3D Ribonuclease Inhibitor 55 285 IPR032675 -
Gso16g0490 794 ProSiteProfiles Leucine-rich repeat profile. 310 331 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0490 Gso-Chr16 5775647 5781020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0490 36 719 Miscellaneous Gene Families AT5G14210 58.069 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gso16g0490 PK_Tyr_Ser-Thr 4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0490 - - gmx:100784640 1491.86