Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0480 ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCTGCATCTGGGCCCCACTTCTCCGGCCTGAGACTCGACGGCCGGGTCCCGTCCTCCGCCACCGCCGCGTCCTCCACTCCCGATTCAACCCTAACCCTCGATTCCCTTCCCAATCAACCCTTCGTCATAGGAGTTTCTGGAGGTACTGCCTCGGGCAAAACCACCGTCTGCGATATGATCATTCAGCAACTCCACGATCACCGCGTTGTCCTCGTAAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGTGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGAGGAAGCTCATCAGTGGCCAGGGAGTGCATGTTCCCATTTATGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCATGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACGCAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTTGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACTGGAGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGCAAAGGCATTAAAATTGGTAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCCATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGAATCCATTGCGTGTGCAAAAGGTTTCCATCATTGAAGATTGTCACATCTGAGATTGACATTGAAATAAATGAAGAGTATCGTGTTATCCCTGGATTGGGGGAATTTGGTGATCGATACTTCGGCACCGATGATTAG 1425 0.4568 MPEETTSIDYVMEAASGPHFSGLRLDGRVPSSATAASSTPDSTLTLDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELERVHEYNFDHPDAFDTEQLLECTRKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDADADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDIEINEEYRVIPGLGEFGDRYFGTDD* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0480 474 SUPERFAMILY PRTase-like 256 473 IPR029057 -
Gso16g0480 474 PANTHER URIDINE KINASE 40 471 - -
Gso16g0480 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 246 IPR027417 -
Gso16g0480 474 CDD UMPK 55 253 IPR000764 -
Gso16g0480 474 Pfam Phosphoribulokinase / Uridine kinase family 55 241 IPR006083 GO:0005524|GO:0016301
Gso16g0480 474 Pfam Uracil phosphoribosyltransferase 271 472 - -
Gso16g0480 474 TIGRFAM udk: uridine kinase 53 253 IPR000764 -
Gso16g0480 474 CDD PRTases_typeI 330 445 IPR000836 -
Gso16g0480 474 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 40 471 IPR029930 GO:0004849|GO:0044206
Gso16g0480 474 Gene3D - 257 472 IPR029057 -
Gso16g0480 474 Gene3D - 50 256 IPR027417 -
Gso16g0480 474 PRINTS Uridine kinase signature 53 70 - -
Gso16g0480 474 PRINTS Uridine kinase signature 83 94 - -
Gso16g0480 474 PRINTS Uridine kinase signature 128 143 - -
Gso16g0480 474 PRINTS Uridine kinase signature 185 195 - -
Gso16g0480 474 PRINTS Uridine kinase signature 199 210 - -
Gso16g0480 474 PRINTS Uridine kinase signature 221 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0480 Gso-Chr16 5659878 5666281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0480 1 474 PRT Gene Family AT5G40870 85.093 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0480 K00876 - gmx:100780005 930.243