LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g0478	ATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA	396	0.3965	MVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN*	132

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso16g0478	131	CDD	S4	57	123	-	-
	Gso16g0478	131	Gene3D	-	56	131	IPR036986	GO:0003723
	Gso16g0478	131	PANTHER	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3	2	130	-	-
	Gso16g0478	131	PANTHER	30S 40S RIBOSOMAL PROTEIN	2	130	IPR022801	-
	Gso16g0478	131	SMART	s4_6	56	123	IPR002942	GO:0003723
	Gso16g0478	131	SUPERFAMILY	Alpha-L RNA-binding motif	9	123	-	-
	Gso16g0478	131	Pfam	Ribosomal protein S4/S9 N-terminal domain	3	54	IPR001912	GO:0019843
	Gso16g0478	131	Pfam	S4 domain	57	102	IPR002942	GO:0003723
	Gso16g0478	131	ProSiteProfiles	S4 RNA-binding domain profile.	57	122	-	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g0478	Gso-Chr16	5631436	5633672	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso16g0478	12	97	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	33.333	8.42e-09	49.7

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g0478	K14560		-	gmx:100817428	262.307

Showing 1 to 1 of 1 entries