Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0478 ATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA 396 0.3965 MVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0478 131 CDD S4 57 123 - -
Gso16g0478 131 Gene3D - 56 131 IPR036986 GO:0003723
Gso16g0478 131 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 2 130 - -
Gso16g0478 131 PANTHER 30S 40S RIBOSOMAL PROTEIN 2 130 IPR022801 -
Gso16g0478 131 SMART s4_6 56 123 IPR002942 GO:0003723
Gso16g0478 131 SUPERFAMILY Alpha-L RNA-binding motif 9 123 - -
Gso16g0478 131 Pfam Ribosomal protein S4/S9 N-terminal domain 3 54 IPR001912 GO:0019843
Gso16g0478 131 Pfam S4 domain 57 102 IPR002942 GO:0003723
Gso16g0478 131 ProSiteProfiles S4 RNA-binding domain profile. 57 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0478 Gso-Chr16 5631436 5633672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0478 12 97 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 8.42e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0478 K14560 - gmx:100817428 262.307