LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g0475	ATGGGAGAGGATTCTAGGGAGTTTGGAAAAAGCACAAAAATCAATCACAAAATGGAAGAAGTTCAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCCCCTGAATGAGCCACTACTGCTCAAGAGGACTCGGACACTGTCTTCCAACCCTCTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTACAATACATATTCTTGAAATGGTTACTAGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTGTTGAGAATATTGCTGGGTATAAGCTTCTGGCTGTTCTTAAATACATCCACAAAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGGCATTAATTTCGTTTTGACATTTGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAGATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCCACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGTCTAGATTTGGGAAAAGAAGGACCGTTGGTGCATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAGGACCAAATGGCACTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCAGGAGTTTGTGCAGCTTTCCGGGCTCCAGTCGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTCAGCACAGCTGTGGTGGTAGTGGTGCTCAGGGCCTTCATTGAAATCTGTCATACTGGGAAATGCGGCCTTTTTGGTGAAGGAGGATTGATCATGTTTGACGTAAGCAATGTCACAGTGAGGTACCATGTTATGGATATCGTCCTTGTTGTAGTCATTGGAATCATTGGTGGTGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAAAAAGGAAGAACACATAAACTCCTCCTCAGTCTTGCAGTTGCACTATTCACATCAATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTGATCCATCACTTCCAGAGTCAGCCTGCCCCACCAACGGACGGTCTGGAAATTTCAAACAATTCAACTGCCCCCCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCCGTTCGAAACATATTCTCAACCAACACTCCTCAAGAATATCAACCATTGTCCCTCGTAATTTTCTTTCTACTCTATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTCTTCCTCCCAATCATTCTGATGGGCTCAGGTTATGGCCGCCTTCTCGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGCTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATTGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCACCAGTGGTTACCCTCCATGGAGTAGAAAAAGTAGCCAAAATAGTAGATGTCTTGAAAAACACAACACATAATGCTTTCCCTGTTATGGACAATGGGGTAGTACCACCAGTAGTAGGACAGGCCAATGGGGGAACAGAACTTCATGGACTGATTCTAAGAGCACATCTCATCCAGGCAATAAAGAAGAAGTGGTTCCTTAAAGAAAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGAGGTGGCTGTGACCAGTGAGGAAATGGAAATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGACCCTCTTCAGGCAAGTTGGACTTCGACATCTGCTCGTAGTACCCAAGTATCAAGCCTCTGGGATATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTACTTGCCCAAAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGGGTAGAGAAAAGACGAATTGA	2376	0.4398	MGEDSREFGKSTKINHKMEEVQREEEIDPESNPLNEPLLLKRTRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENIAGYKLLAVLKYIHKERYLTGFLYFTGINFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRTKWHWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHTGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKVLRLYNLINQKGRTHKLLLSLAVALFTSMCQYGLPFLAKCTPCDPSLPESACPTNGRSGNFKQFNCPPGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLVIFFLLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFIDANPEPWMRNLTVGELVDVKPPVVTLHGVEKVAKIVDVLKNTTHNAFPVMDNGVVPPVVGQANGGTELHGLILRAHLIQAIKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMTLFRQVGLRHLLVVPKYQASGISPVIGILTRQDLLAQNILTVFPHLAKSKGREKTN*	792

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso16g0475	791	Pfam	Voltage gated chloride channel	150	564	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Gso16g0475	791	ProSiteProfiles	CBS domain profile.	718	784	IPR000644	-
Gso16g0475	791	PANTHER	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	11	786	-	-
Gso16g0475	791	MobiDBLite	consensus disorder prediction	1	30	-	-
Gso16g0475	791	Gene3D	-	593	773	IPR046342	-
Gso16g0475	791	PRINTS	Chloride channel signature	162	179	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Gso16g0475	791	PRINTS	Chloride channel signature	193	212	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Gso16g0475	791	PRINTS	Chloride channel signature	257	276	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Gso16g0475	791	PRINTS	Chloride channel signature	483	503	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Gso16g0475	791	PRINTS	Chloride channel signature	515	531	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g0475	Gso-Chr16	5606464	5612042	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso16g0475	3	786	Ion Channels	AT3G27170	78.827	0.0	1248

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g0475	K05016		-	gmx:100788620	1479.54

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso19g0783	19	31906644	31911602	Gso16g0475	16	5606464	5612042	GST
Gso16g0475	16	5606464	5612042	Gso5g0669	5	10002421	10007490	PCT
Gso5g0669	5	10002421	10007490	Gso16g0475	16	5606464	5612042	PCT

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