Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0475 ATGGGAGAGGATTCTAGGGAGTTTGGAAAAAGCACAAAAATCAATCACAAAATGGAAGAAGTTCAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCCCCTGAATGAGCCACTACTGCTCAAGAGGACTCGGACACTGTCTTCCAACCCTCTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTACAATACATATTCTTGAAATGGTTACTAGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTGTTGAGAATATTGCTGGGTATAAGCTTCTGGCTGTTCTTAAATACATCCACAAAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGGCATTAATTTCGTTTTGACATTTGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAGATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCCACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGTCTAGATTTGGGAAAAGAAGGACCGTTGGTGCATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAGGACCAAATGGCACTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCAGGAGTTTGTGCAGCTTTCCGGGCTCCAGTCGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTCAGCACAGCTGTGGTGGTAGTGGTGCTCAGGGCCTTCATTGAAATCTGTCATACTGGGAAATGCGGCCTTTTTGGTGAAGGAGGATTGATCATGTTTGACGTAAGCAATGTCACAGTGAGGTACCATGTTATGGATATCGTCCTTGTTGTAGTCATTGGAATCATTGGTGGTGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAAAAAGGAAGAACACATAAACTCCTCCTCAGTCTTGCAGTTGCACTATTCACATCAATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTGATCCATCACTTCCAGAGTCAGCCTGCCCCACCAACGGACGGTCTGGAAATTTCAAACAATTCAACTGCCCCCCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCCGTTCGAAACATATTCTCAACCAACACTCCTCAAGAATATCAACCATTGTCCCTCGTAATTTTCTTTCTACTCTATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTCTTCCTCCCAATCATTCTGATGGGCTCAGGTTATGGCCGCCTTCTCGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGCTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATTGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCACCAGTGGTTACCCTCCATGGAGTAGAAAAAGTAGCCAAAATAGTAGATGTCTTGAAAAACACAACACATAATGCTTTCCCTGTTATGGACAATGGGGTAGTACCACCAGTAGTAGGACAGGCCAATGGGGGAACAGAACTTCATGGACTGATTCTAAGAGCACATCTCATCCAGGCAATAAAGAAGAAGTGGTTCCTTAAAGAAAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGAGGTGGCTGTGACCAGTGAGGAAATGGAAATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGACCCTCTTCAGGCAAGTTGGACTTCGACATCTGCTCGTAGTACCCAAGTATCAAGCCTCTGGGATATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTACTTGCCCAAAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGGGTAGAGAAAAGACGAATTGA 2376 0.4398 MGEDSREFGKSTKINHKMEEVQREEEIDPESNPLNEPLLLKRTRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENIAGYKLLAVLKYIHKERYLTGFLYFTGINFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRTKWHWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHTGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKVLRLYNLINQKGRTHKLLLSLAVALFTSMCQYGLPFLAKCTPCDPSLPESACPTNGRSGNFKQFNCPPGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLVIFFLLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFIDANPEPWMRNLTVGELVDVKPPVVTLHGVEKVAKIVDVLKNTTHNAFPVMDNGVVPPVVGQANGGTELHGLILRAHLIQAIKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMTLFRQVGLRHLLVVPKYQASGISPVIGILTRQDLLAQNILTVFPHLAKSKGREKTN* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0475 791 Pfam Voltage gated chloride channel 150 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 ProSiteProfiles CBS domain profile. 718 784 IPR000644 -
Gso16g0475 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 786 - -
Gso16g0475 791 MobiDBLite consensus disorder prediction 1 30 - -
Gso16g0475 791 Gene3D - 593 773 IPR046342 -
Gso16g0475 791 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 PRINTS Chloride channel signature 483 503 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 PRINTS Chloride channel signature 515 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 PRINTS Chloride channel signature 533 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 PRINTS Chloride channel signature 571 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g0475 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 604 770 - -
Gso16g0475 791 SMART cbs_1 606 666 IPR000644 -
Gso16g0475 791 SMART cbs_1 721 774 IPR000644 -
Gso16g0475 791 SUPERFAMILY CBS-domain pair 588 771 IPR046342 -
Gso16g0475 791 Gene3D Clc chloride channel 84 586 - -
Gso16g0475 791 PANTHER CHLORIDE CHANNEL PROTEIN 11 786 - -
Gso16g0475 791 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g0475 791 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g0475 791 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g0475 791 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g0475 791 PRINTS Plant CLC chloride channel signature 435 451 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g0475 791 SUPERFAMILY Clc chloride channel 71 586 IPR014743 -
Gso16g0475 791 MobiDBLite consensus disorder prediction 1 34 - -
Gso16g0475 791 CDD ClC_6_like 62 584 - -
Gso16g0475 791 Pfam CBS domain 720 770 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0475 Gso-Chr16 5606464 5612042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0475 3 786 Ion Channels AT3G27170 78.827 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0475 K05016 - gmx:100788620 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0783 19 31906644 31911602 Gso16g0475 16 5606464 5612042 GST
Gso16g0475 16 5606464 5612042 Gso5g0669 5 10002421 10007490 PCT
Gso5g0669 5 10002421 10007490 Gso16g0475 16 5606464 5612042 PCT