Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0473 ATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTTCCCATGCTTCACCCTGAGAAATTCGTTAAGCTAGGAATTGATCCTCCAAAGGGTGTTCTTTGCTATAGTCCACCAGGGACTGGCAAAACACTTTTAGCTAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGATGCTCGAATGGTTCGTGAACTATTTCAGATGGCCCACTCAAAGACGGCATGCATTGTGTTTTTCGATGAAGTTGATGCAATTGGGGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAGCACACTATGCTTGAAATTGTGAATTCTACCGGTAAGAGCACCTTCTAA 450 0.4289 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYSPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEDARMVRELFQMAHSKTACIVFFDEVDAIGGARFDDGVGGDNEVQHTMLEIVNSTGKSTF* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0473 149 Pfam ATPase family associated with various cellular activities (AAA) 50 143 IPR003959 GO:0005524|GO:0016887
Gso16g0473 149 CDD AAA 16 148 - -
Gso16g0473 149 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 1 143 - -
Gso16g0473 149 Gene3D - 1 148 IPR027417 -
Gso16g0473 149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 144 IPR027417 -
Gso16g0473 149 SMART AAA_5 46 144 IPR003593 -
Gso16g0473 149 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0473 Gso-Chr16 5584314 5587292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0473 15 147 Calmodulin-binding Proteins AT3G56690 32.331 6.75e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0473 K03061 - gmx:100816363 296.589