Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0447 ATGGATTGGGATGGGAAAGAGTTTGCTTGGGATCCACGTGGGTTGGAGCTGGCTAATGGTGAAGGCCAGAAGAGTGAAGCAGCTTCAGTGGATTTGAGGCTTGGTGAGGAAAAAACAGCCCCAGATGTTGTTGCTAAGGACACAAAAGACTCAAAAACCGTGTCATCGCCATCCGGGTCGTCGAAAAGATCCCGCCTTCAGAATGGATTACAGAACATGTGTTGTTCTGTTGATGGATGCAATTCTGATCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGCGAAAAGCACTCCAAAACCCCGGTTGTGATGGTGGGGGGGAAACAACAGAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCGCTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAACGGCTTGACGGGCATAACAGGCGCCGGAGGAAACCTCAGCCACCCTCTCTTTTCATGGCTGCTGAGAAGTTCATGTACAATTACAAAGGACCTAGAATCCTACACTTTGGTAGCCCTGAGGCTTATGCCAACCCTATTATGAGAGACATGTGGCCTGCTGCTGCCAAAACTGGAGCTGAATCTGGTCATGATTCTCCTCGACTTTTATACAGAATTGACAAGCATAAGCAAGATAAGGGACATCCTCTTTGGCAAGAAAATGACCCTAAAGTAGGCAGTGGTGATGAAGCAATGCCGGGAACTCCCATTTGTCAGCCTATTCATGGCACCATCGCCCCATCAATGGGTGGAAAGAGCAACCGAAAGCTCTCTACAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTATGGTGCAATCTAGCATCACCTGCCCTGTGCAATCTCCATCAGGATCTGTGCATTTTGATGCTGTGAATGAGTATGCATGCTCAGAAACGGAAAGAGATAAGCCTAGTGGTCAAGTATTGGTTTTCGATGCAAAAACAACCAACCTTCATTACAACGGAATGCTGCAAATGGATCTCGATGGATTTGTTGAAAATGAGGACCCACTAGCACTTCCTTTCTTGTGGGAGTAG 1098 0.4727 MDWDGKEFAWDPRGLELANGEGQKSEAASVDLRLGEEKTAPDVVAKDTKDSKTVSSPSGSSKRSRLQNGLQNMCCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVMVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPEAYANPIMRDMWPAAAKTGAESGHDSPRLLYRIDKHKQDKGHPLWQENDPKVGSGDEAMPGTPICQPIHGTIAPSMGGKSNRKLSTDAKPGSFDSGCALYLLSTLQSQSPELSMVQSSITCPVQSPSGSVHFDAVNEYACSETERDKPSGQVLVFDAKTTNLHYNGMLQMDLDGFVENEDPLALPFLWE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0447 365 MobiDBLite consensus disorder prediction 50 65 - -
Gso16g0447 365 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
Gso16g0447 365 Gene3D - 66 136 IPR036893 GO:0003677|GO:0005634
Gso16g0447 365 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 365 IPR044817 GO:0003677
Gso16g0447 365 MobiDBLite consensus disorder prediction 1 65 - -
Gso16g0447 365 Pfam SBP domain 75 148 IPR004333 GO:0003677
Gso16g0447 365 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 10 365 - -
Gso16g0447 365 MobiDBLite consensus disorder prediction 30 49 - -
Gso16g0447 365 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0447 Gso-Chr16 5302653 5306582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0447 20 173 SBP-box Gene Family AT5G50670 50.888 2.69e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso16g0447 SBP 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0447 - - gmx:100792071 754.207