Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0428 ATGGGTAGCTGCCCTTGTTTCGGGTTGAGGAGCTGGAAGACCAGAGTGAAGAGCGGCGTCAAGGCTCATCAGGACGAACAGAACAAGAATCGCAAATCTCTGGACAACAACAGCAATAATAATATTAATAATGTCTCTGAAACTTCTTCAGGACTTGGACCAGAAGAAAACCTAACAGAGAGTGGCAGTTCTTATAAGCCTCAGATATTTACCTTCCGGGAGCTTGCAACAGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGGCAAGGTGGATTTGGCATTGTTTATAAAGGCACGATCGGGAAAATAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACTGGTGTCCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATTCCAACCTTGTTAATATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCTTTAGAATCTCATCTTCATGATGTTTCACCTGATGAAGAACCACTTGATTGGAATACCAGAATGATGATAGCATGTGGGGCAGCAAAAGGACTAAATTATCTGCACCATGAAGCAAAGCCTTCTGTTATATACAGGGATCTGAAATCATCCAACATACTATTGGATGAAGGTTTCCATCCAAAACTTTCTGATTTTGGGCTTGCAAAATTTGGTCCAACCGGAGAACAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACGATTAGATCTGACATTTACAGTTTTGGGGTTGTGTTATTGGAACTAATTACTGGACGCAGAGCATATGATGATAACAGTGGCCCTGTAAAGCATCTTGTAGAATGGGCACGCCCAATGTTTAGAGACAAAAGGAGTTTTCCAAGATTGGTAGATCCACGGCTTAAAGGTAACTACCCAGGATCATATCTATCGAATACCATTGAATTGGCAGCCATGTGTCTTCGTGAAGAGCCACATCAACGGCCTAGTGCAGGTCATATAGTGGAAGCTCTAGAATTCTTGTCATCCAAGCAATATACCCCAAAAGTATCCAACACAGTCAACTCAGCAGGGATGGAGAGTGTAGAATCTCCAAAAGAAACATCTGTGATTTTGCCTCAAGAATCAGAAAGAGAGCGAGCTGTTGCAGAGGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACAAAGTGAGCAAAGTAGTCCTGAAGGAAGCAAATAG 1275 0.4282 MGSCPCFGLRSWKTRVKSGVKAHQDEQNKNRKSLDNNSNNNINNVSETSSGLGPEENLTESGSSYKPQIFTFRELATATKNFRDETFIGQGGFGIVYKGTIGKINQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHSNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMMIACGAAKGLNYLHHEAKPSVIYRDLKSSNILLDEGFHPKLSDFGLAKFGPTGEQSYVATRVMGTQGYCAPEYATSGKLTIRSDIYSFGVVLLELITGRRAYDDNSGPVKHLVEWARPMFRDKRSFPRLVDPRLKGNYPGSYLSNTIELAAMCLREEPHQRPSAGHIVEALEFLSSKQYTPKVSNTVNSAGMESVESPKETSVILPQESERERAVAEAKLWGETWRQRRQSEQSSPEGSK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0428 424 ProSiteProfiles Protein kinase domain profile. 82 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0428 424 Pfam Protein kinase domain 83 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0428 424 SMART serkin_6 82 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0428 424 MobiDBLite consensus disorder prediction 33 62 - -
Gso16g0428 424 CDD STKc_IRAK 88 356 - -
Gso16g0428 424 PANTHER OS07G0668900 PROTEIN 13 377 - -
Gso16g0428 424 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
Gso16g0428 424 SUPERFAMILY Protein kinase-like (PK-like) 60 358 IPR011009 -
Gso16g0428 424 MobiDBLite consensus disorder prediction 374 395 - -
Gso16g0428 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gso16g0428 424 MobiDBLite consensus disorder prediction 18 62 - -
Gso16g0428 424 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Gso16g0428 424 MobiDBLite consensus disorder prediction 18 32 - -
Gso16g0428 424 Gene3D Phosphorylase Kinase; domain 1 54 158 - -
Gso16g0428 424 PANTHER OS07G0668900 PROTEIN 13 377 - -
Gso16g0428 424 MobiDBLite consensus disorder prediction 374 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0428 Gso-Chr16 4973276 4979861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0428 1 419 Glycoside Hydrolase AT3G07070 50.698 4.62e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso16g0428 Pkinase 6.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0428 K13430 - gmx:100805675 829.32