Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0426 ATGGAAGTCTTAAACCCGATTGAAGGCAAGACCTACAAGCTCCCAGTTGGATACAGATTTGATCCAAGTGATGAAATTCTTGCTGGTTACTATCTCAGGAAGAGGATCATGGCCCAACCATCCCCTAATGACCTCATTCAAGACTGTGATGTTTACCAAACAGTGCCTTGGGAGCTGCCAGGAGGTGGTAGTAAGAATTTGAATTGGCAGAGGTTTTTCTTCCATGATTTGAGGACCCGTGTGTTCGAAAACCTCAACAAGAGAGAAGCCGGGAACGGTCAATGGAGAACAATAGAGAAAGCTCAAGATTTTGAGCTCTCTAAAGAACAGGTTGTTGCAAGAAAGAACGTTTTGGCTTTCTGGGAAGCCAAGGGCAATGGTTTTGCCAAATCGAATTGGGTGATGCATGAATTTCGCCTCGTCTCGAAATCGCATCCTTCCATGGTGTCAGCTATGGCTGTGTATCGCATATTCAAGACGAAGAAGGAAGGAAGAAAGGGAAAGAAGGCAAAAAGGTCTGAAGGGGAGACCTCTAGCAGCAGCAGCAGTGAGGAAGAAGCTATGGATGAGACACCCATTGTCATTGATTTCACAATGGAGAATGGCACTGTGACTGGTCCTCCCTCTCCTGCTACCAGTGAAGCTTCCTAA 651 0.4608 MEVLNPIEGKTYKLPVGYRFDPSDEILAGYYLRKRIMAQPSPNDLIQDCDVYQTVPWELPGGGSKNLNWQRFFFHDLRTRVFENLNKREAGNGQWRTIEKAQDFELSKEQVVARKNVLAFWEAKGNGFAKSNWVMHEFRLVSKSHPSMVSAMAVYRIFKTKKEGRKGKKAKRSEGETSSSSSSEEEAMDETPIVIDFTMENGTVTGPPSPATSEAS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0426 216 PANTHER NAC TRANSCRIPTION FACTOR 56 13 190 - -
Gso16g0426 216 Gene3D NAC domain 23 166 IPR036093 GO:0003677|GO:0006355
Gso16g0426 216 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Gso16g0426 216 MobiDBLite consensus disorder prediction 165 216 - -
Gso16g0426 216 MobiDBLite consensus disorder prediction 202 216 - -
Gso16g0426 216 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Gso16g0426 216 SUPERFAMILY NAC domain 11 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0426 Gso-Chr16 4942281 4944180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0426 1 166 NAC Transcription Factor Family AT5G13180 32.749 4.96e-23 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g0426 NAM 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0426 - - gmx:100305869 418.698