Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0423 ATGGCAGACCCAACAGCTATTTACGAGTTTTTCAAGCAGCAGCCCTCAAACGGTGGTGGAAAGAGAGCACCACCACCGTCCTCCGCCGGCGGCACCACACGCACCTTCCAATGCCACTTCTGCCACCGCAAGTTCTACACCTCCCAAGCCCTCGGCGGCCACCAGAACGCCCACAAGCTTGAGCGCGCCGCCGCGAGAAGATCCTCCGCCAACGCCAACCTCAACCTCAACGTCGTCCCCCCTGCTGCTACTAACGGGCCCATGCCCATGCTGGAGCCCACCGAGCTCTTTTTTCACCACCACCCTCCTTACTGGCTCGATGTGGAGCCCTTGCAGCACTTTCATCATCACCACACTTCTGCACCTCTTTCTTCCTTCCACGCTGCTGCGTCTTCCGTTTCCGCACCTCAACAACAACAACTTCTTCTCTCCGCCGGACACAACAACGTCGTCGACGTCGCTGCTTCTTCCGACCACGTCAACCTCGACCTCACCCTCCGCTTGTGA 507 0.5917 MADPTAIYEFFKQQPSNGGGKRAPPPSSAGGTTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRSSANANLNLNVVPPAATNGPMPMLEPTELFFHHHPPYWLDVEPLQHFHHHHTSAPLSSFHAAASSVSAPQQQQLLLSAGHNNVVDVAASSDHVNLDLTLRL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0423 168 PANTHER OS02G0182300 PROTEIN 24 168 - -
Gso16g0423 168 PANTHER ZINC FINGER PROTEIN JAGGED 24 168 IPR045320 GO:0003700
Gso16g0423 168 Gene3D Classic Zinc Finger 26 78 - -
Gso16g0423 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Gso16g0423 168 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Gso16g0423 168 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Gso16g0423 168 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0423 Gso-Chr16 4891016 4891578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0423 34 105 C2H2 Transcription Factor Family AT5G14010 51.389 1.97e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0423 - - gmx:102661833 316.62