Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0418 ATGTTGCCATGCGATTACTGCCATTCCAAACCCGCCATACTCTTCTGCAGACCAGATTCCGCTAAACTATGCTTGCTATGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGACCGACACCGCTGTCCTCCGCTGCTCCACCGACAACCTCGTCCTCTGCCACCACTGCGATGTGGAAACCCACGGTGCTGCCGCTTCCTCCCACCACCAACGTCACCGCCTCCACGGCCTCTCCGGCTGCCCCTCCGTCACGGAGATCGCCTCCGCGCTGTGCCTCGATTTCCGGGCCCAGGATCCCGTGGTCCCCACCGCCGCCTCCGGCGGTCGCGATGAGGTGTACGAGCAGGTGCTGGAAATCGCGCGGCAGAGGAACGACGACCTCGGCGCCGAACAACTCAAGTTCGACGAATCCCCCATAAACGACGTCGTTGTTGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTTTGCTTATGTTGCCAAATTCCGAATCTGAATTCGACTCCCGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAAAAATCAAGAGATTGCCATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGAGCACAATATGAAGTACTCAACAATTGGTGATGACATTGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAAGAAAGAAGAGAACAACAAAAAAGCTAAAGGTGGGTTATCATCAGAGTCCAAACTGTTTGAATCCATACCGTACAATGGCACCAACAATGTCGTAGTCATGGAGCATCTTGTTGGTGGGAATGAAAATGTTGGCACCTTAACAGCCAGGGTTAGTTTGGAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCGTGA 1146 0.5079 MLPCDYCHSKPAILFCRPDSAKLCLLCDQHVHAANALSLKHVRFQICDSCKTDTAVLRCSTDNLVLCHHCDVETHGAAASSHHQRHRLHGLSGCPSVTEIASALCLDFRAQDPVVPTAASGGRDEVYEQVLEIARQRNDDLGAEQLKFDESPINDVVVVDEMLMQQTPFTSLLMLPNSESEFDSRKSNDNNGYGTEAGDLLWNYNPAYQPPQVWDFQLQKSRDCHEPRVVTFDGLEVPKLFQDEHNMKYSTIGDDIDILSRNNQSDQSSSSHAKKKEENNKKAKGGLSSESKLFESIPYNGTNNVVVMEHLVGGNENVGTLTARVSLEELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0418 381 MobiDBLite consensus disorder prediction 260 289 - -
Gso16g0418 381 ProSiteProfiles CCT domain profile. 334 376 IPR010402 GO:0005515
Gso16g0418 381 Pfam CCT motif 334 376 IPR010402 GO:0005515
Gso16g0418 381 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 379 - -
Gso16g0418 381 SMART bboxneu5 1 46 IPR000315 GO:0008270
Gso16g0418 381 ProSiteProfiles Zinc finger B-box type profile. 42 88 IPR000315 GO:0008270
Gso16g0418 381 CDD Bbox1_BBX-like 3 46 - -
Gso16g0418 381 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Gso16g0418 381 MobiDBLite consensus disorder prediction 270 285 - -
Gso16g0418 381 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 2 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0418 Gso-Chr16 4819612 4823643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0418 1 378 C2C2-CO-like Transcription Factor Family AT2G33500 35.096 3.65e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso16g0418 CCT 8.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0418 - - gmx:100801439 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0860 19 34705498 34709054 Gso16g0418 16 4819612 4823643 GST