Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0412 ATGATGATGGATCCGCGACAGCGAGAGAAGCTACTTCACAAAACCGAGGCCTGTGCTTTCGTGGCAGGTGTTGTTCCGGAGCTTTCCCTTGTCACCGTTCCAGGGAACAACAACAACACCAACAACGTTAACAACAACAACAACAACGTTTCTCATTCTCAATCTCACCGGTCGGGTCGGATCCATGAAAACCACCACCACCACCACCTTGGTCTCGTGGCTGCTGTCTCCACCACCTTCGGAACTGTTCACAGGAAGAAAAGGATGGCCAGACAAAGAAGATCCACTAACCCCACTTTGTTGATGAACCCTCTCATCAACAACAACAACAACAAGTCTGGTTCTTCTCTTCCTTCTCCAAGTACTGCTTCCTCCTCGCACGTGCCACTCTCCTCCTCAACTCTCCCGCCCGCACGTGAAATCGATCAAAGAAGGTTGAGATTCCTTTTCCAGAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGAATTGTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAATACTGGAGACTTTGTCAACACACATGGCCTTCGCTTTGGAGATTCCATTTTGGTTTACCAAGATAGTGAAAACAACAATTATGTTATTCAGGCGAAAAAGGCTTCTGATCAGGATGAATTTATGGAAGAAACTAGTGATACCATCAATGATATCTTCCTTAATGATTATGAAGTGAACAAACCTGGTTGCTTCAATGTAACCTATCCTGCAGTGAATGATACAGGCATGTCATTCATATATGAGACTACCTTCTCAAATGACTCCCCTCTTGATTTTTTGGGTGGATCAATGACCAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTAA 1017 0.4346 MMMDPRQREKLLHKTEACAFVAGVVPELSLVTVPGNNNNTNNVNNNNNNVSHSQSHRSGRIHENHHHHHLGLVAAVSTTFGTVHRKKRMARQRRSTNPTLLMNPLINNNNNKSGSSLPSPSTASSSHVPLSSSTLPPAREIDQRRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGIVISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLRFGDSILVYQDSENNNYVIQAKKASDQDEFMEETSDTINDIFLNDYEVNKPGCFNVTYPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0412 338 MobiDBLite consensus disorder prediction 37 55 - -
Gso16g0412 338 MobiDBLite consensus disorder prediction 94 137 - -
Gso16g0412 338 MobiDBLite consensus disorder prediction 85 137 - -
Gso16g0412 338 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Gso16g0412 338 SUPERFAMILY DNA-binding pseudobarrel domain 148 247 IPR015300 -
Gso16g0412 338 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 39 338 - -
Gso16g0412 338 Gene3D - 146 264 IPR015300 -
Gso16g0412 338 CDD B3_DNA 148 250 IPR003340 GO:0003677
Gso16g0412 338 MobiDBLite consensus disorder prediction 37 64 - -
Gso16g0412 338 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 338 IPR044800 GO:0003700
Gso16g0412 338 SMART B3_2 150 252 IPR003340 GO:0003677
Gso16g0412 338 Pfam B3 DNA binding domain 150 248 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0412 Gso-Chr16 4756285 4760324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0412 67 338 B3 DNA Binding Superfamily AT3G26790 51.307 2.09e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso16g0412 B3 1.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0412 - - gmx:100783961 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0869 19 34828580 34833067 Gso16g0412 16 4756285 4760324 GST