Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0411 ATGACAAGAGAGAGGAAGGAAGCAATGGCGAGCAGGTACTGGGCAGTGTCTCTTCCCGTCCCCAACTCCGCATCTCAGCTCTGGAACCAATTCCAGGAACGAATCTCCAAGCATTCCTTCGACACTCCTCTCTACAGATTCAACATCCCCAACCTCCGCATCGGAACCCTAGACTCTCTCCTCTCCCTCAGCGATGACCTCGCCAAGTCCAACAATTTCGTGGAAGGAGTTACGCACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGATTGTGGATGGTATTCACAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGATAAATTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCGGATAATTTTAGAACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAGTTAGATAAATTGGTACAAGATCAGGAAAGATTGAGGGCTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGTGTTTTAGCTCCTTCTGTAAAATCCGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGCAGGTGATGCCGATGCTCACCCCTATGTGTCTTTCACCATCAATGTTGCTTGA 1155 0.4675 MTRERKEAMASRYWAVSLPVPNSASQLWNQFQERISKHSFDTPLYRFNIPNLRIGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGIDTGALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIVTSENLTTLLAIVSKYSQKDWLSSYETLINYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSPETHENRKQELDKLVQDQERLRASLLQWCYTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLTDSTNSAYWKTEDEVGAGMAGLAGDADAHPYVSFTINVA* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0411 384 Pfam V-ATPase subunit C 13 377 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso16g0411 384 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 9 384 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso16g0411 384 Gene3D Vacuolar atp synthase subunit c; domain 1 25 342 - -
Gso16g0411 384 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 9 384 - -
Gso16g0411 384 SUPERFAMILY Vacuolar ATP synthase subunit C 9 383 IPR036132 GO:0015078|GO:0033180|GO:1902600
Gso16g0411 384 CDD V-ATPase_C 13 381 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso16g0411 384 Gene3D - 171 259 - -
Gso16g0411 384 Gene3D - 49 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0411 Gso-Chr16 4740879 4746052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0411 9 384 Primary Pumps ATPases(2) AT1G12840 82.447 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0411 K02148 - gmx:100780187 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0870 19 34840719 34846149 Gso16g0411 16 4740879 4746052 GST