Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0406 ATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCGAGGAAGAAGAAGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACACCAACAACAACAACCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTCAACAACAACAGCAGCAACAACATGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCGCAGCAGCAGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAAGGAGGAAGAGGAGGGGAGGGGGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCTTGGATTCCGTGGGCTTCCATGGTATGATGTGA 1353 0.5107 MNMERYTLPAPPINIILEEEEEEENIAIAMGAPLIPSFKSMLQHQQQQPDSYFNFNFNSSISSATIPFVPNMESFPSLDPFSPSLSSLPFFNNNSSNNMAFDPGFDLGLDTTGLHSSVPPAPHLFSQAQMGFEFSELEALTGPGNGNNAPFADGAKVAAAMLLRPPPLDGAQQQQQQPTLYRKRRGTAAEIPGLETVRRKGRKWEEGGRGGEGEEGSSADVDGSGLNYESDEQNENNGNNGLKLSENNGGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLTPSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSVGFHGMM* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0406 450 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 68 450 - -
Gso16g0406 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Gso16g0406 450 PANTHER BHLH TRANSCRIPTIONAL FACTOR 68 450 - -
Gso16g0406 450 MobiDBLite consensus disorder prediction 168 268 - -
Gso16g0406 450 SMART finulus 264 313 IPR011598 GO:0046983
Gso16g0406 450 MobiDBLite consensus disorder prediction 223 247 - -
Gso16g0406 450 CDD bHLH_AtAMS_like 261 325 - -
Gso16g0406 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 327 IPR036638 GO:0046983
Gso16g0406 450 MobiDBLite consensus disorder prediction 195 216 - -
Gso16g0406 450 CDD ACT_UUR-ACR-like 379 420 - -
Gso16g0406 450 Pfam Helix-loop-helix DNA-binding domain 265 307 IPR011598 GO:0046983
Gso16g0406 450 Coils Coil 301 321 - -
Gso16g0406 450 MobiDBLite consensus disorder prediction 249 268 - -
Gso16g0406 450 Gene3D - 252 321 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0406 Gso-Chr16 4669131 4673211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0406 136 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 63.823 1.56e-101 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso16g0406 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0406 - - gmx:100804797 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0879 19 35008422 35012131 Gso16g0406 16 4669131 4673211 GST
Gso16g0406 16 4669131 4673211 Gso16g1183 16 31047873 31052198 PCT
Gso16g0406 16 4669131 4673211 Gso19g0879 19 35008422 35012131 PCT
Gso16g1183 16 31047873 31052198 Gso16g0406 16 4669131 4673211 PCT
Gso19g0879 19 35008422 35012131 Gso16g0406 16 4669131 4673211 PCT