Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0401 ATGTCCATCTTGCCCTCACAAACCCAAGCCGCATCTTCGTCTTCTTCCTCTGCGCCATCTCCTAACCCTAATTCCCAACATGGAATCGGAATCCCTATTCCTCAACCCTTCCCTTCTCTTTCCCCCTCACCAATCAACCTCACTTTCGGATCTCTCCAGATCTCCGATACCCCAGGTTCATCGGCTTCAGCTGCTCAAGATTCTTGTGGATCTTCCGAAAAGGTGACAGAAGTAGGGTCTCCAAGTGGAGTAATGGTTTCACCTCAGCAAAACTCTAGAACAGGTTCTAGGAGTCATGGGGGAAGACGGACTGGAATGGGAACAGGAACAGCTTCTTATCATAGAAATCAACAAACTCCTGGGTCCGTCCATTCTCACGGAAGTGCCCCTTCGGCGGGGAGAAAAGCTCAGACGGTGAACGGGAATTACTTGCTGAATTTTCAATATGACCCGATATCCCGTTCTCAACCACGGGGTCCTCCTCCTCCCCCTACCACTACAAGAAGGCATCGGAAGAGGAAGCCGTACAACAAAGATTTGTTTCTGCAGGCAAATTACAAGTTCATGGTGCTAGGTTTGGGAAATTATTCACCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTGACCCCCTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCATGTGTCCGCAGATAACCACATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTATTGATGGGTGAAGAGGATCACAAAGGTGATAGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACCTTGCACATCACAAATGTAAAACAGTATCAAGTAGGAGATAATGTTGAGTTCACCTTTTTAACACGGAAAAAGGATTCCTTTACTCTGTCACTTAAAAATAAACGAGAGACAAATACCACATCAGGTGTCGATGGAGATATCTGTGATCCCTTTTCTAAGTTCACTCTTATATCAGATGTAGATCTCTCAGTGAAGCATGCAATATCCGATCTAGATGGTTGGCTAGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAGTGAGCACAGGTCTCATGACAGTGAAAAATCTTCTATGATTATTGATTGTGGACACCAGATACCATCAACAGTTGCAAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGATCAATAACTTCTTCTTCTGATTTCCTTGATCAAAATAAGGTTATGATGTTGGATAAGTCAACTGCTGGAGCCTGTTCGGATCAAAACTTGGATGTGGAGAAAGAATTAATAGAGCAGGAAATGAATTTATCTTCTTCATATGAGGAGAAAAATGATAATCAAAGGCATTCAGAAGGTGTTATTGGAGATGTGAAGGAAAATAGTTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATTCTACAGTTGGAAACAGTTACTCAGACTGAAGCCATCAGGAGGCGGTATCGATTTCTTAGTCATTTTCCATTAACCACAACCTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTGCCTCCTGAAGCATTGGCCCCATTTATAGATGAAATCAAGAAGCGTGCAAATCAGAGGAAGCAACTTGCAAAAAAGGAAAAGAAGGAAAAAATAAAGGCTGAAGCTACTGCTGCTTATTCTCTTCCCATATCATTAAGTCATCAGTTTACTTCTCGCGATGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTATATCATCAAGTCCTCCCCTAGCTGGGGAGAGAAAATCATTCTCAAATGTTACTAGGCTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTACAAATTCAAGAAACTAGTGGTCTACATAATAACAACAGGACCTCTGATTCTTCTGTCTCAACAGGCTTGAGAAATGGGGAGACACAATCATACTCCAATGTTATATCAAGAGCAGAATCTAATATAAGCTCGAATGCACCAAAGACAAATGAGTTGGGGAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCGACAGCCGGTGGTAGGCGTTATTGA 2247 0.4206 MSILPSQTQAASSSSSSAPSPNPNSQHGIGIPIPQPFPSLSPSPINLTFGSLQISDTPGSSASAAQDSCGSSEKVTEVGSPSGVMVSPQQNSRTGSRSHGGRRTGMGTGTASYHRNQQTPGSVHSHGSAPSAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPTTTRRHRKRKPYNKDLFLQANYKFMVLGLGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPMCPQITTCGHIFCFPCILQYLLMGEEDHKGDSWKRCPLCFVMISAKDLYTLHITNVKQYQVGDNVEFTFLTRKKDSFTLSLKNKRETNTTSGVDGDICDPFSKFTLISDVDLSVKHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWSEHRSHDSEKSSMIIDCGHQIPSTVANSMDTDDENCSNGSITSSSDFLDQNKVMMLDKSTAGACSDQNLDVEKELIEQEMNLSSSYEEKNDNQRHSEGVIGDVKENSSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLETVTQTEAIRRRYRFLSHFPLTTTFQLCEVDLSEMLPPEALAPFIDEIKKRANQRKQLAKKEKKEKIKAEATAAYSLPISLSHQFTSRDDPPTFSMDDFEALGNSTISSSPPLAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNRTSDSSVSTGLRNGETQSYSNVISRAESNISSNAPKTNELGKKGKKPNRVLLSTAGGRRY* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0401 748 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Gso16g0401 748 PANTHER RING FINGER 10 FAMILY MEMBER 92 744 IPR039739 -
Gso16g0401 748 SUPERFAMILY RING/U-box 224 278 - -
Gso16g0401 748 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Gso16g0401 748 CDD RING-HC_RNF10 225 272 - -
Gso16g0401 748 MobiDBLite consensus disorder prediction 679 726 - -
Gso16g0401 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 303 IPR013083 -
Gso16g0401 748 Coils Coil 584 608 - -
Gso16g0401 748 MobiDBLite consensus disorder prediction 679 748 - -
Gso16g0401 748 MobiDBLite consensus disorder prediction 42 135 - -
Gso16g0401 748 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Gso16g0401 748 SMART ring_2 225 271 IPR001841 -
Gso16g0401 748 MobiDBLite consensus disorder prediction 150 174 - -
Gso16g0401 748 MobiDBLite consensus disorder prediction 1 135 - -
Gso16g0401 748 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0401 133 698 C3H Transcription Factor Family AT3G26730 55.155 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0401 - - gmx:100798764 1414.05