Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0393 ATGCATCCAATCAATACTGGTGATGATAGCACCCTTTCTTCACCAATTCCACAATATGGGCAAATAAGCAATTCTTGCTTGATTGAGACTCAGGACCCATCCCTACAGCCTTTAAATCAAGGAGGTAATGGGAGAAAAAGACATTATAGAGGAGTTAGGCAGAGACCGTGGGGCAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCTGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGCTCCAAAGCCAAGCTCAATTTCCCTGAACATGTTCTTCTTCCTCCTCCTCCAATATCATCATCATCACCACCTTGTAATAATAATAATAATCATCATAGTTATTATTATGGTTCTTCAGCTCTTGCACCTCTTGCACCACCACCACAACATGTTTATGATCAAACACCACCACCACCACAACAACAACCCTTGCTATCATCATCAGCACAAGAAGAAGGGTTTCCAAATCTAATGCAGTACGCGCAGCTTCTTTGGAGTAGGGATGATGATGATCTACAGCGTATTGCTTCAGGCCTTCATCAACACCATCATCACAATGAGGCTTTTTATGATTCAAGTTCTTCAACTTTGTTCTCATCAACTTCCACTACTTATTCTATGACTGTGTCTGATCAACAGCAGAATATTGGAGATGACACGAGTACTCCCATGGGGGCAGAATATAATTATGGTGGCTGCTTTTTTAGAGGGAGTGATTTTCATGACAAGAATTGA 786 0.4313 MHPINTGDDSTLSSPIPQYGQISNSCLIETQDPSLQPLNQGGNGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLLPPPPISSSSPPCNNNNNHHSYYYGSSALAPLAPPPQHVYDQTPPPPQQQPLLSSSAQEEGFPNLMQYAQLLWSRDDDDLQRIASGLHQHHHHNEAFYDSSSSTLFSSTSTTYSMTVSDQQQNIGDDTSTPMGAEYNYGGCFFRGSDFHDKN* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0393 261 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Gso16g0393 261 MobiDBLite consensus disorder prediction 142 164 - -
Gso16g0393 261 MobiDBLite consensus disorder prediction 30 51 - -
Gso16g0393 261 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 11 245 - -
Gso16g0393 261 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Gso16g0393 261 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Gso16g0393 261 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Gso16g0393 261 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Gso16g0393 261 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Gso16g0393 261 MobiDBLite consensus disorder prediction 146 160 - -
Gso16g0393 261 Gene3D AP2/ERF domain 47 107 IPR036955 GO:0003700|GO:0006355
Gso16g0393 261 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Gso16g0393 261 PANTHER DNA-BINDING DOMAIN 11 245 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0393 Gso-Chr16 4477208 4479422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0393 31 110 AP2-EREBP Transcription Factor Family AT5G61890 79.518 1.58e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso16g0393 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0393 - - gmx:100816370 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0897 19 35278165 35303093 Gso16g0393 16 4477208 4479422 GST
Gso16g0393 16 4477208 4479422 Gso16g1320 16 32598981 32601745 PCT
Gso16g0393 16 4477208 4479422 Gso2g0660 2 6812491 6814731 PCT
Gso16g1185 16 31089966 31092264 Gso16g0393 16 4477208 4479422 PCT
Gso19g0897 19 35278165 35303093 Gso16g0393 16 4477208 4479422 PCT