Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0391 ATGGATCTTCTTTTTCTTCATTCCCTCTTCTTCTTCTTCTTCTTCTTCACTTCAAATGACGCAAATGCCCTCGATGCCACTATTCCTCGCGACGCATTGTCCCTTCTCAGCTTCAAACGCTTCGTCTCTTCCGACCCTTCCAACCTCCTCGCCGCCTGGTCCAACCGCACTTCCCCGAATCTCTGCCGCTGGCGCGCCGTCGCGTGCGGCGTCGCCGGCAGAGTCACCGTCCTCAACGTGACCGGCCTCCGCGGCGGCGAGCTATCGCCCTCCGTCGGCGACATGTCCGAGCTCCGCGTCCTGTCCCTCGCCGGAAACATGTTCTCCGGTGAGATTCCGGTGACCTTGGTGAATCTCCAGTTTCTCGAGGTTCTTGAGCTTCAAGGTAACAACTTTTCAGGGAAAATCCCCACCCAGATGAGTTTTACTTTTCTTCAAGTTGTTAACCTCTCCGGTAATGCCTTCTCCGGTTCGATACCGAGTGAAATTATTGGCTCTGGGAATGTAAAAATCGTTGATTTATCCAATAATCAGTTTTCTGGTGTGATTCCTGTGAATGGTAGTTGTGATTCCTTAAAGCATTTGAGGTTGTCGCTTAACTTTTTGACTGGGGAGATTCCACCCCAAATTGGGGAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATCTTGGAGGGTAGAATCCCTTCTGAGATTGGCCATATTGTTGAACTTAGAGTTCTAGATGTTTCTAGAAACTCCCTCACTGGAAGGGTCCCCAAGGAGTTGGCTAATTGTGTTAAACTGTCTGTGCTTGTGCTCACTGATTTGTTCGAGGATCGCGACGAGGGAGGCTTGGAGGATGGGTTTAGAGGAGAGTTTAATGCCTTTGTTGGGAACATACCTCACCAAGTGTTGCTGCTTTCGAGTCTGAGGGTTTTGTGGGCGCCAAGGGCCAACCTTGGTGGACGGTTGCCTAGTGGCTGGTCGGATTTGTGCTCTCTGAGGGTGCTCAATTTGGCGCAGAATTATGTTGCCGGTGTTGTTCCAGAGAGTTTGGGGATGTGTAGGAATTTAAGTTTCTTGGACTTGAGTTCTAACATTTTGGTGGGGTATCTGCCTTCATTGCAGCTTCGGGTTCCTTGTATGATGTACTTCAATATCAGCAGGAATAATATATCTGGCACTCTTCAAGGGTTTAGGAATGAAAGCTGTGGTGCAAGTGCACTGGATGCTTCATTCCTAGAGTTGAATGGTTTTAATGTCTGGAGGTTTCAAAAGAATGCTCTCATTGGATCTGGTTTTGAAGAGACCAACACTGTTGTTGTTAGCCATGATTTCAGTTGGAACAGTTTCAGTGGATCCTTACCTTTGTTTTCTCTTGGAGATAATCTGTCTGGTGCAAATCGTAATGTCTCCTACACTCTGTCTCTCAATAATAACAAGTTCAATGGAACTCTACTGTATCAGTTAGTTTCAAACTGTAATGACCTCAAGACATTGTCAGTTAACTTGAGTCTGAACCAACTATCCAGTGGGAATTTCCAGGCATCATTTTGGGGGTGCCGGAAGTTGATAGATTTTGAAGCCGCATACAACCAGATTGATGGGTCAATTGGACCTGGTATAGGAGACTTGATGATGCTTCAGCGTCTTGATTTAAGTGGGAACAAACTATCTGGATCACTGCCTAGTCAGTTGGGAAACCTACAAAACATGAAATGGATGCTTTTGGGAGGAAACAATCTAACCGGGGAAATTCCTTCCCAACTTGGCCTGTTGACTTCCCTTGCTGTTTTAAATCTGTCTCGCAATGCTCTAGTTGGAACAATTCCTGTGAGTTTGTCAAATGCCAAAAATCTTGAAACACTGTTGCTAGATCACAACAACCTTTCCGGGGAAATACCATTAACTTTTTCTACTCTTGCCAATCTTGCTCAACTGGATGTTTCTTTTAACAATCTTTCTGGTCATATTCCTCATCTTCAACACCCAAGTGTTTGTGATTCCTATAAAGGAAATGCACACCTGCACTCTTGCCCTGATCCATATTCTGACTCACCTGCTTCTCTTCCATTCCCCCTTGAAATCCAGCGTACGCATAAACGGTGGAAATTAAGGACAATGGTTATTGCTGTGGTCACGTCTGCTTCTGTGACTCTCTGCACACTTCTGGTAATAGTATTGGTGATCTTTTCTCGAAGGAGTAAATTTGGTCGTCTTAGCAGTATTAGAAGGCGACAGGTAGTGACCTTTCAAGATGTTCCAACTGAATTGAATTATGACACTGTAGTCACAGCTACTGGAAATTTCAGCATCCGGTATCTAATTGGCACAGGTGGCTTTGGGTCAACGTACAAGGCAGAGCTGTCCCCAGGTTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGATTTCAGGGCATTCAACAGTTTGAAACAGAAATAAGGACATTAGGCAGAATTCGACACAAAAATCTTGTGACTCTTGTTGGCTATTACGTAGGAAAGGCTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGGAACCTTGAAGCCTTCATACATGACAGGTCAGGGAAAAATGTGCAGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCCCTTGCTTACCTTCATTACTCTTGTGTTCCTCGCATTGTTCACCGGGATATCAAACCTAGCAACATCTTACTTGATGAAGATCTTAATGCCTACCTGTCAGATTTTGGCTTGGCGCGACTACTTGAAGTATCCGAAACGCATGCCACCACTGATGTGGCTGGCACATTTGGTTATGTTGCACCGGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTCTACAGCTTTGGTGTAGTGTTATTAGAATTGATGTCTGGAAGAAAGTCACTTGATCCATCTTTTTCTGAGTATGGAAATGGATTCAATATTGTACCATGGGCAGAGCTGCTAATGACAGAAAGGCGTTGTTCCGAGCTATTTGTATCTACTTTGTGGGAAGCAGGGCCTAAGGAAAAATTGTTGGGGCTTTTAAAGCTCGCGTTAACATGCACAGAAGAGACTCTTTCTATTCGACCATCAATGAAACATGTTCTTGAGAAATTGAAACAGTTGAAAAGTTGA 3129 0.4465 MDLLFLHSLFFFFFFFTSNDANALDATIPRDALSLLSFKRFVSSDPSNLLAAWSNRTSPNLCRWRAVACGVAGRVTVLNVTGLRGGELSPSVGDMSELRVLSLAGNMFSGEIPVTLVNLQFLEVLELQGNNFSGKIPTQMSFTFLQVVNLSGNAFSGSIPSEIIGSGNVKIVDLSNNQFSGVIPVNGSCDSLKHLRLSLNFLTGEIPPQIGECRNLRTLLVDGNILEGRIPSEIGHIVELRVLDVSRNSLTGRVPKELANCVKLSVLVLTDLFEDRDEGGLEDGFRGEFNAFVGNIPHQVLLLSSLRVLWAPRANLGGRLPSGWSDLCSLRVLNLAQNYVAGVVPESLGMCRNLSFLDLSSNILVGYLPSLQLRVPCMMYFNISRNNISGTLQGFRNESCGASALDASFLELNGFNVWRFQKNALIGSGFEETNTVVVSHDFSWNSFSGSLPLFSLGDNLSGANRNVSYTLSLNNNKFNGTLLYQLVSNCNDLKTLSVNLSLNQLSSGNFQASFWGCRKLIDFEAAYNQIDGSIGPGIGDLMMLQRLDLSGNKLSGSLPSQLGNLQNMKWMLLGGNNLTGEIPSQLGLLTSLAVLNLSRNALVGTIPVSLSNAKNLETLLLDHNNLSGEIPLTFSTLANLAQLDVSFNNLSGHIPHLQHPSVCDSYKGNAHLHSCPDPYSDSPASLPFPLEIQRTHKRWKLRTMVIAVVTSASVTLCTLLVIVLVIFSRRSKFGRLSSIRRRQVVTFQDVPTELNYDTVVTATGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLVGYYVGKAEMFLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIAEALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAELLMTERRCSELFVSTLWEAGPKEKLLGLLKLALTCTEETLSIRPSMKHVLEKLKQLKS* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0391 1042 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 1041 - -
Gso16g0391 1042 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Gso16g0391 1042 Gene3D Phosphorylase Kinase; domain 1 729 841 - -
Gso16g0391 1042 SMART serkin_6 766 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0391 1042 Gene3D Ribonuclease Inhibitor 27 84 IPR032675 -
Gso16g0391 1042 ProSiteProfiles Protein kinase domain profile. 766 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0391 1042 Gene3D Transferase(Phosphotransferase) domain 1 842 1041 - -
Gso16g0391 1042 Gene3D Ribonuclease Inhibitor 284 404 IPR032675 -
Gso16g0391 1042 ProSitePatterns Protein kinases ATP-binding region signature. 772 794 IPR017441 GO:0005524
Gso16g0391 1042 SUPERFAMILY Protein kinase-like (PK-like) 744 1037 IPR011009 -
Gso16g0391 1042 CDD STKc_IRAK 772 1040 - -
Gso16g0391 1042 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 6 1041 - -
Gso16g0391 1042 SMART LRR_typ_2 327 350 IPR003591 -
Gso16g0391 1042 SMART LRR_typ_2 541 565 IPR003591 -
Gso16g0391 1042 SMART LRR_typ_2 142 166 IPR003591 -
Gso16g0391 1042 SMART LRR_typ_2 95 119 IPR003591 -
Gso16g0391 1042 SMART LRR_typ_2 589 613 IPR003591 -
Gso16g0391 1042 SMART LRR_typ_2 237 261 IPR003591 -
Gso16g0391 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Gso16g0391 1042 SUPERFAMILY L domain-like 470 579 - -
Gso16g0391 1042 PRINTS Leucine-rich repeat signature 544 557 - -
Gso16g0391 1042 PRINTS Leucine-rich repeat signature 589 602 - -
Gso16g0391 1042 SUPERFAMILY L domain-like 90 660 - -
Gso16g0391 1042 Gene3D Ribonuclease Inhibitor 85 272 IPR032675 -
Gso16g0391 1042 Gene3D Ribonuclease Inhibitor 406 677 IPR032675 -
Gso16g0391 1042 Pfam Protein kinase domain 771 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0391 Gso-Chr16 4445518 4450210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0391 16 1041 Receptor kinase-like Gene Family AT3G02130 43.123 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Gso16g0391 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0391 - - gmx:100795047 1998.4