Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0386 ATGGAAGCTGCTACATTTCCTCACCAACTTCATCAGGTGAAGCCATTCCACTTTTTCAAGATCATAACCACTCAAAATCTGCAGGATGGAAAACTAATGATCCCAAATAAGTTTGTGGAGAAATATGGAGAAGGCTTACCAAATGCTCTATTTCTTAAGACTCCAAATGGTACTGAGTGGAACTTCAATCTGGAAAAGCATGATGGTAAAATATGGTTTCAAAAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTTTGGTTTTCAGACGCCATGGAACTTCCCATTTTCAGGTACACATCTTTGATCTGAGTTCCTTAGAGATAGATTACCCTTCTAAAGGTACAGAAGGTAAAACGTCCCCCAATCATGAAGGAAATAAACAACCTCGAAATGAAGAAAATTTGGAATATCTTCAACCATATCAAGTGAGAAGTCATAAAAGTGTTAAAGTTGAGAACATGATGACATTGCCAGAGGAGGCTCAGCCACATACCGACACAAAGTTCAAAGAAAAATCAAAGGTTGTTGTTGCTAACCAAGTTACAGCTCTTGACCTAGCAAGTTCTTTCAAACCTTGTAATCCATTCTTCTTAGTTGTCATGCGTCCATCGTACATCCAATCTAATGGCGGTCCTCTGCCTTTACAGACAAAGTTTTGTAGGAGACACTTTGGTTTGCTCAATAACAGACATATCAACCTTCAGGTGTTAAATGGGAGAATTTGGCCTGCAAAGTATATGATCCAGAAAATGAAGAACAAAACAAATTTTAGACTAACAAGTGGATGGAAGACATTTGTCAAGGACAATAACTTGAAAGTTGGCAATGTTTGCACCTTTGAACTCATTGATGGAACTAAACTAACCTTACTGGTTCACATCTTCAGAGGGACAAATGGTTCAAATTGTTCAACATCTCAAGCTTGTCAAGAATAG 954 0.3836 MEAATFPHQLHQVKPFHFFKIITTQNLQDGKLMIPNKFVEKYGEGLPNALFLKTPNGTEWNFNLEKHDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHGTSHFQVHIFDLSSLEIDYPSKGTEGKTSPNHEGNKQPRNEENLEYLQPYQVRSHKSVKVENMMTLPEEAQPHTDTKFKEKSKVVVANQVTALDLASSFKPCNPFFLVVMRPSYIQSNGGPLPLQTKFCRRHFGLLNNRHINLQVLNGRIWPAKYMIQKMKNKTNFRLTSGWKTFVKDNNLKVGNVCTFELIDGTKLTLLVHIFRGTNGSNCSTSQACQE* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0386 317 Pfam B3 DNA binding domain 203 303 IPR003340 GO:0003677
Gso16g0386 317 Pfam B3 DNA binding domain 18 108 IPR003340 GO:0003677
Gso16g0386 317 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 302 - -
Gso16g0386 317 SMART B3_2 18 110 IPR003340 GO:0003677
Gso16g0386 317 SMART B3_2 203 304 IPR003340 GO:0003677
Gso16g0386 317 CDD B3_DNA 201 302 IPR003340 GO:0003677
Gso16g0386 317 SUPERFAMILY DNA-binding pseudobarrel domain 196 302 IPR015300 -
Gso16g0386 317 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Gso16g0386 317 PANTHER B3 DOMAIN-CONTAINING 10 302 - -
Gso16g0386 317 SUPERFAMILY DNA-binding pseudobarrel domain 12 110 IPR015300 -
Gso16g0386 317 Gene3D - 180 305 IPR015300 -
Gso16g0386 317 MobiDBLite consensus disorder prediction 118 139 - -
Gso16g0386 317 ProSiteProfiles B3 DNA-binding domain profile. 204 304 IPR003340 GO:0003677
Gso16g0386 317 CDD B3_DNA 16 108 IPR003340 GO:0003677
Gso16g0386 317 Gene3D - 10 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0386 Gso-Chr16 4391019 4393818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0386 14 315 B3 DNA Binding Superfamily AT3G18990 30.028 1.72e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso16g0386 B3 6.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0386 - - gmx:100793469 645.58