Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0384 ATGGTTCTTCAAAATGATATTGATTTGCTAAATCCTCCGGTTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTTCAGTCACCAAACTCTTTCTTCATGGATGTTAAGTGCCAGGGTTGCTTCAACATAACCACTGTCTTTAGCCACTCTCAGACTGTTGTTGTATGCGGAAACTGCCAGACTGTCTTGTGTCAACCAACCGGTGGCCGGGCAAGGCTAACCGAGGGATGCTCCTTTAGGAAGAAGGGAGACTGA 261 0.4674 MVLQNDIDLLNPPVELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0384 86 Gene3D - 5 85 IPR023407 -
Gso16g0384 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Gso16g0384 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gso16g0384 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gso16g0384 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gso16g0384 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Gso16g0384 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0384 Gso-Chr16 4378298 4379582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0384 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 5.08e-59 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0384 K02978 - gmx:100499804 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0907 19 35621675 35622930 Gso16g0384 16 4378298 4379582 GST
Gso16g0384 16 4378298 4379582 Gso16g1193 16 31165119 31166355 PCT
Gso16g0384 16 4378298 4379582 Gso19g0907 19 35621675 35622930 PCT
Gso16g1193 16 31165119 31166355 Gso16g0384 16 4378298 4379582 PCT
Gso19g0907 19 35621675 35622930 Gso16g0384 16 4378298 4379582 PCT