Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0381 ATGAATCCGCGCACGACGTCGTCGTCGAAGGCGAAGAAAAAGCAAACGACAACGACGCAGGAGTCGCCGCACCAAAGGGCATCATCATCATGGGGAGGGAGGTACCTCGGCGTGCGGCGGAGGCCGTGGGGTCGGTACGCGGCGGAGATTCGCGACCCTTCCACGAAGGAGCGGCACTGGCTCGGCACGTTCGACACCGCCGACGAGGCCGCGCTGGCGTACGACAGAGCCGCACGTGCCATGCGGGGCTCACGTGCCCGCACCAACTTCGTCTACGCCGACACCACCCCCGGCTCCTCCGTCACCCCCATCATTTCACCCGACCAACCACAACCCGACCCGGTTCTTTCATTCGACCCGTTTTCCCTCCTCGCCTTCCCCTCCGATAGCACGATAGAGCTTCCTCCGTTGCCACCGGATATTACTAGCTCCGTGGGTTATGAAGGGTTTTACAATAATGATGGAGGGTATTATTGGGAGGAGGATGATAATTACTTGCATAATCCAATGTTTAGCACAATGCCAGCAGTGTCAGACAATGTGGCTGCAGCAGCAGGGTCGTCTCAAGTTTTTGATTTTGGAAACTCCTCTTTTTTCTTCTGA 603 0.5738 MNPRTTSSSKAKKKQTTTTQESPHQRASSSWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSVTPIISPDQPQPDPVLSFDPFSLLAFPSDSTIELPPLPPDITSSVGYEGFYNNDGGYYWEEDDNYLHNPMFSTMPAVSDNVAAAAGSSQVFDFGNSSFFF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0381 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 114 - -
Gso16g0381 200 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Gso16g0381 200 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Gso16g0381 200 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Gso16g0381 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 114 - -
Gso16g0381 200 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Gso16g0381 200 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Gso16g0381 200 MobiDBLite consensus disorder prediction 1 34 - -
Gso16g0381 200 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Gso16g0381 200 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Gso16g0381 200 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Gso16g0381 200 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0381 Gso-Chr16 4331731 4332438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0381 6 180 AP2-EREBP Transcription Factor Family AT5G13910 47.664 6.31e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso16g0381 AP2 6.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0381 K09286 - gmx:100792421 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0381 16 4331731 4332438 Gso16g1195 16 31200099 31201265 PCT
Gso16g0381 16 4331731 4332438 Gso2g0563 2 5883438 5884650 PCT
Gso16g1195 16 31200099 31201265 Gso16g0381 16 4331731 4332438 PCT
Gso2g0563 2 5883438 5884650 Gso16g0381 16 4331731 4332438 PCT