Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0378 ATGAGTTTTCAAGACATCCAAGGTGGGCCCAACCCTCCCTCTCGCCGGAACCAGTCCCCGTCGCAGGCCGTTGCCGCCGGAATTTTCCAGATCAACACCGCCGTCGCTACTTTCCGGCGACTCGTCGATGGCGTTGGAACCGTTAAAGACACTCCCGAACACCGTCAGAAACTGCACAATACGAGGCAGAGAATATTGCTGCTGGTGAAAGATAGTTCTGCTAAGCTCAAATCCTTGACTGAATCTGATCGTGATGCTAATGCCAATGCTAGTAAGAAAATTGAGGATGCTAAGCTTGCAAGAGATTTCCAAACCACATTGCAAGAGTTCCAGAAAGTACAACAGCTTGCCTCTGAGCGCGAATCAGCTTATACCCCTGCTGCCCCTTCTTCTTTACCAACAAGCTCTGGCTCTGGTGAAGAATCGGTTGGGATAGACGTGGAAAGCCAACCTTTTATCAGAGAGCATAAGAGGCAAGAGATACTTCTGTTGGACAATGAAATATCCTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTAGCTGTTCTGGTTCATGATCAGGGTGTTGTTATTGATGACATTCATTCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTCCAGCTAGCTAAGGCTTCCAAAAGTGTGAAATCCAAAACCTCATGGTGTTGGTGGTTGCTTGCAATTTTTGTGGTCGTGCTTGTCATCTTACTTGTTGTACTCATTTTTTAG 798 0.4599 MSFQDIQGGPNPPSRRNQSPSQAVAAGIFQINTAVATFRRLVDGVGTVKDTPEHRQKLHNTRQRILLLVKDSSAKLKSLTESDRDANANASKKIEDAKLARDFQTTLQEFQKVQQLASERESAYTPAAPSSLPTSSGSGEESVGIDVESQPFIREHKRQEILLLDNEISFNEAMIEEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIHSNIDASAGATTQARVQLAKASKSVKSKTSWCWWLLAIFVVVLVILLVVLIF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0378 265 Gene3D - 13 130 - -
Gso16g0378 265 MobiDBLite consensus disorder prediction 118 145 - -
Gso16g0378 265 SUPERFAMILY t-snare proteins 19 227 IPR010989 GO:0016020|GO:0016192
Gso16g0378 265 Gene3D - 166 265 - -
Gso16g0378 265 CDD SNARE_Qa 175 233 - -
Gso16g0378 265 Pfam SNARE domain 209 260 IPR000727 -
Gso16g0378 265 PANTHER SYNTAXIN 15 264 IPR045242 -
Gso16g0378 265 MobiDBLite consensus disorder prediction 118 143 - -
Gso16g0378 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Gso16g0378 265 Coils Coil 175 195 - -
Gso16g0378 265 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Gso16g0378 265 PANTHER SYNTAXIN-22-LIKE 15 264 - -
Gso16g0378 265 SMART tSNARE_6 167 234 IPR000727 -
Gso16g0378 265 SMART SynN_4 8 122 IPR006011 GO:0016020
Gso16g0378 265 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0378 Gso-Chr16 4288943 4291641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0378 1 252 SNARE and Associated Proteins AT5G46860 58.366 3.48e-97 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0378 - K08488 gsj:114389394 439.884