Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0352 ATGGAAGAGCCTATTGTGGTGAACAAAGGTGAGGAGCCTTTAGATTTGCCTCCAGGTTTCAGGTTCCACCCTACCGATGAAGAGATAATCACTTATTATCTCACTGAGAAGGTGAAGAATAGCATTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCAAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGTCAAAAGGATAGGAAGTACCCAACTGGGATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACAGGAAAAGATAAGGAGATTTACAAAGGGAAAGGGAACCTTGTGGGGATGAAGAAGACCCTCGTGTTCTATAAAGGGAGAGCTCCAAAGGGTGAGAAGAGCAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCTAGTTACAATCTTCCTAAGGCAGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTTTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTCCCATCTCTCATGGATCCTCCTTATGGCAACAACACCAACACCACCAACAACAACAACAACAATGCTAACCCACTTTCATCAACTAAATTATCACAATCAGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACAACCACCACCAGCTTCTCATCAAGCCAGAAGACCACCACAACCACAGAATCTATGAATTTCCCACAATTAACTTCACCTCCAACCAAACCAATCTCAGCAGCAACAACGTTAACCCAATGGGGAACAACAACACACTCTCATCACAGCCCTTAAACATGTTCTCAGCTGATTACTATGTACACCAAAACAGGATCAAAAGCTCCATCATGCCAAGTGTTGCAGGCTCAGGTTTTGTTAGCGACAACAATAACCATGATGAAGCTATCCTAAGAGCATTTGCAGCCAAGAACAACGAGCACATACAGTGCAAGATGGAGCAATTTTCTTCTAACCACTCACAAGACACGGGCTTGAGCAACGACAGAAACACAACTGACACATCCTCGGTGGTTTCGATGGGAAGAAATAATAATAATAGGGCACTGTACGAGGATCTTGAAGGCCCTTCTTCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGATGATGACTACTGA 1224 0.4346 MEEPIVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVKNSIFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYKGRAPKGEKSNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPSLMDPPYGNNTNTTNNNNNNANPLSSTKLSQSEGYYLPSFSINNNHHQLLIKPEDHHNHRIYEFPTINFTSNQTNLSSNNVNPMGNNNTLSSQPLNMFSADYYVHQNRIKSSIMPSVAGSGFVSDNNNHDEAILRAFAAKNNEHIQCKMEQFSSNHSQDTGLSNDRNTTDTSSVVSMGRNNNNRALYEDLEGPSSVAPLSDLECLQWDDDY* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0352 407 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Gso16g0352 407 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 369 - -
Gso16g0352 407 MobiDBLite consensus disorder prediction 201 224 - -
Gso16g0352 407 MobiDBLite consensus disorder prediction 348 376 - -
Gso16g0352 407 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Gso16g0352 407 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Gso16g0352 407 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Gso16g0352 407 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0352 Gso-Chr16 3960767 3963020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0352 1 211 NAC Transcription Factor Family AT5G18270 71.364 2.90e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso16g0352 NAM 8.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0352 - - gmx:100820105 803.127