Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0350 ATGGCTTGCAGTCAGTTTGCGTTTCAGGGCACAGAGTCAAAGCCTTGTGACGCGGAATCAGCAGTGCCGGTGACCCTTTTGATTAAGCACTTGCCAGAAGCCATTCCTCACGACACCCTTTCTCGAATCTTTGCCAATTTCGGCGCTTCCTTTGTTCGCCCTTGCTCTAGCGCCAGGTTGAGAAATTGTGCTTTTGCGGATTTCAAAAATGAGATTGTGGCATCTCAAGCACAACGACAACTAAATGGGTTGAGATTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAGTAACCCAACTGAGAATGGTGAAAAAAGTAGCGGAGACCAGCTGGGAAAGGACCCTAAAACATCAATGCTGATGAATGCAAATGTAACCAAACCTATTGATGGAGATACAAAATCAGGAGGCCTCCCTATTCCTGAACCTATTGCTGATAGACTTGGTGTCAATTATCCATTTCCTCCACATCTTGAGTATGCTTACCCTCCGCCTGATGGAAATATATTGACCAATATTGTGAATGCTCTAATTGCTGTTCCCCGCTTTTACACTCAGGTTCTACACTTGATGAACAAAATGAACATCCCAGCTCCATTTCGTATGGCACTGCCCACACCTCCATTACCTCCAGAGGTACCAGCACTGCCACCACCTCCACCTGCACCAACTGTAACTGTGAATCCTCGGTCTGCAGATCTGTCTAGTGGCGAATCGGAGATGGAATCTTCAGATGAGGAGGTTGAAGCAAGAACAAAAAAGTCTGGACAAAAGCGTGCCAGGCGTGAGACCATTGTTGGCCCTGCTATTGATAAGGGTGTGGCTCATGAGTCTGTTGGAGTAAAACCAGCCACCTTGGTTCCAAAGGAAATCCCTGTGATAAAAAAGAACCATGTCTTAAAGATAAACATTGTTCCCAAAGCAACAGTGAAAGAACATAAAGATGATGACACAACACAAGAGTTACAAGAGCCAGAAAAAGATGTTCCAGATCCTAACAAATTTTTTACTCCAGATGAATTAGAGAGAGGAAAGCTTCCTCCTGAGGAAATCTTATCCCTTCCAATGTTTAAGAACTATACAGCTGGAAATCCTGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGATTGCTGATGATTTCTATTTTATATTTGGGTCCTTGTTTGGAAGTATTGAGGCTGCTAAGTCTGGTCTTCAAGTCAAACTGATGCAGGAAGGACGAATGAGGGGTCAAGCGTTTATAACGTTTCCCTCAATTGAGTTGGCTCATCATGCTTTAAATCTAGTGAATGGATATGTATTAAAAGGCAAGCCAATGATCATCCAGTTTGGTCGAAATCCTGCTGCTGCTAAGGCAACCTAA 1371 0.4362 MACSQFAFQGTESKPCDAESAVPVTLLIKHLPEAIPHDTLSRIFANFGASFVRPCSSARLRNCAFADFKNEIVASQAQRQLNGLRFLGKVLSAERASNPTENGEKSSGDQLGKDPKTSMLMNANVTKPIDGDTKSGGLPIPEPIADRLGVNYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPALPPPPPAPTVTVNPRSADLSSGESEMESSDEEVEARTKKSGQKRARRETIVGPAIDKGVAHESVGVKPATLVPKEIPVIKKNHVLKINIVPKATVKEHKDDDTTQELQEPEKDVPDPNKFFTPDELERGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIEAAKSGLQVKLMQEGRMRGQAFITFPSIELAHHALNLVNGYVLKGKPMIIQFGRNPAAAKAT* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0350 456 CDD RRM2_RBM40_like 368 447 - -
Gso16g0350 456 MobiDBLite consensus disorder prediction 211 226 - -
Gso16g0350 456 PANTHER UNCHARACTERIZED 15 455 IPR045164 -
Gso16g0350 456 MobiDBLite consensus disorder prediction 211 260 - -
Gso16g0350 456 MobiDBLite consensus disorder prediction 246 260 - -
Gso16g0350 456 SMART rrm1_1 25 94 IPR000504 GO:0003723
Gso16g0350 456 SMART rrm1_1 368 445 IPR000504 GO:0003723
Gso16g0350 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 91 IPR000504 GO:0003723
Gso16g0350 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 441 IPR000504 GO:0003723
Gso16g0350 456 Gene3D - 362 456 IPR012677 -
Gso16g0350 456 Gene3D - 17 112 IPR012677 -
Gso16g0350 456 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 15 455 - -
Gso16g0350 456 SUPERFAMILY RNA-binding domain, RBD 25 450 IPR035979 GO:0003676
Gso16g0350 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 98 IPR000504 GO:0003723
Gso16g0350 456 MobiDBLite consensus disorder prediction 95 117 - -
Gso16g0350 456 MobiDBLite consensus disorder prediction 312 340 - -
Gso16g0350 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 449 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0350 Gso-Chr16 3940942 3948232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0350 369 445 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 1.39e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0350 K13157 - gmx:100818499 860.522