Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0346 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGTGAGTGCCAACAAGTGCAGGTTTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAATTTGTTGAAGACTGTTTTTCAAGCCCACCAAGCTGTGTCTTGGTACCTGTTGGTGTTAAGACTACAAGTACAAAAAGCACAAGCACAAGCATCAACCCTTCTTTGAAGAGACCTCAACAACAAAATGAGCCACCTTTGCAAAACTTTGCTGTGCCAGGGAAGGCAAGGAGCAAAAGGAAGAGGCTTTCAGCACCAAGAACCAACAAAGACCCTCTAAGCATATGGTCACACCATTTGAACCCTCAAAATGAGGCCTTGTGTTCTGACCCTCCTCTACTCAAACAGGCTTATTGGTTGGCAGACAGTGAACTCATCATGCCAAAGCCAAAGGATAAGGAGGAGCAACAAGAAGAGGTTGTGATCATGGCCAAAGAGGATGAAGAAAAAGTGATTATTAATGTGAGCAAGGAAATAAGCTTTGGGGACTCTGAACTTGATGAGGGTAGCAATGGTCAACAACAACCAATGCCAAGAAGGTGCACACATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTGAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTGTTTACTCCATTTCTAGTGAGCAGTAG 846 0.4586 MNMDMCQNVSVSGECQQVQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSCVLVPVGVKTTSTKSTSTSINPSLKRPQQQNEPPLQNFAVPGKARSKRKRLSAPRTNKDPLSIWSHHLNPQNEALCSDPPLLKQAYWLADSELIMPKPKDKEEQQEEVVIMAKEDEEKVIINVSKEISFGDSELDEGSNGQQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVYSISSEQ* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0346 281 PANTHER GATA TRANSCRIPTION FACTOR 3 281 - -
Gso16g0346 281 CDD ZnF_GATA 208 255 IPR000679 GO:0006355|GO:0043565
Gso16g0346 281 Pfam GATA zinc finger 209 243 IPR000679 GO:0006355|GO:0043565
Gso16g0346 281 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 281 - -
Gso16g0346 281 SMART GATA_3 203 257 IPR000679 GO:0006355|GO:0043565
Gso16g0346 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 267 - -
Gso16g0346 281 MobiDBLite consensus disorder prediction 72 96 - -
Gso16g0346 281 ProSiteProfiles GATA-type zinc finger domain profile. 203 239 IPR000679 GO:0006355|GO:0043565
Gso16g0346 281 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Gso16g0346 281 MobiDBLite consensus disorder prediction 72 123 - -
Gso16g0346 281 Gene3D - 199 271 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0346 Gso-Chr16 3896815 3898223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0346 42 271 C2C2-Gata Transcription Factor Family AT4G32890 40.773 2.73e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso16g0346 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0346 - - gmx:100812088 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0937 19 36386221 36387655 Gso16g0346 16 3896815 3898223 GST
Gso16g0346 16 3896815 3898223 Gso16g1224 16 31568766 31570664 PCT
Gso16g0346 16 3896815 3898223 Gso2g0593 2 6185565 6187457 PCT
Gso16g1224 16 31568766 31570664 Gso16g0346 16 3896815 3898223 PCT
Gso2g0593 2 6185565 6187457 Gso16g0346 16 3896815 3898223 PCT