Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0338 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAACGGCTTGGAGATCTTCAGCCTGGTCCACTGCCTGTTGATCAAGGAGAGAATTGGCAACAACCTGCTGCTCCGAATCGAACTAGGAGGAGAGTTGGAGGTGGTAGAGGAAGAGGTGGTAATGCCACAGCTGTAGGCAAAGGGCCATCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATCTGGACCCTGAACCTTGCGAAGTCTTGCCAGAACCTGTTGCTTTAGGGGCTCCGGAACCAGTTTACAATAACGTAGAGGTAGTGGCCAATAATAATATTGTGATGGAGGGTGGAAGTGGAGATAAGGTGGCGGGAGCTGAAGAAGAACCAAGCACAACTCCTGTCCCTGAGAGGGTACAAGTAGGTAACTCTCCTATATATAAGATAGAGAGGAAATTGGGTAAGGGTGGTTTTGGTCAAGTTTATGTTGGCCGGAGGTTAAGTGGTGGCTCTGATCGAACAGGTCCTGATGCGGTTGAGGTTGCACTTAAGTTTGAGCACAGAAACAGCAAAGGTTGCAACTATGGGCCTCCTTATGAGTGGCAAGTATACAGCACTCTGAATGGCTGTTATGGCATTCCCTGGGTTCATTACAAGGGTCGGCAAGGAGATTTCTACATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTGTTGGTCAACAAATGTCACCAAATATGGTTGCGTGCATTGCAGTAGAGGCAATATCAATTCTTGAGAAGCTCCACTTGAAAGGGTTTGTGCATGGAGATGTGAAACCTGAAAACTTTTTGCTTGGTCAACCTGGATCAGCTGAAGATAAGAAGTTATATCTTATTGATCTTGGTCTGGCTTCTAGATGGAAGGATGCATCATCTGGTCTACATGTTGATTATGATCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGAAGTCGAAGGGATGACCTTGAGTCACTGGCATACACACTAGTATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAGAAAATGGCCACTTCCCCGGAGTTGATGTGCTGCTTTGTTCCTGCTCCATTTAAGCAGTTTCTTGAAGCTGTTACTAATATGAGATTTGATGAGGAGCCCAATTATGCCAAGCTTATATCACTTTTTGAAAGCTTGATTGAACCATGCACTCCGTTGAGACCTATTAGAATAGATGGAGCTTTAAAGGTTGGCCAAAAGCGAGGAAGGATGCTTATAAATCTGGAAGAAGATGAGCAACCTAAGAAGAAAGTGCGATTGGGGAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCTCGCCGTCCCATGAAGCAGAGATATCACTATAATGTTGCAGACACTAGGCTACGGCAGCATGTAGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTGCAGCAAATCTGTGGGCTCTAATCATGGATGCAGGAACAGGTTTTTCTTCACAAGTTTATGAGTTATCCCCGGCCTTCCTGCACAAGGACTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCTGGCGCAGTTAATGGAAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACGCAGCAGTCCTACAAAGTGAGTGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCAATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCCAGTGAAGGAATCCATCGTCGATGGGAGAATGGTTACCGGATTACTTCTATGGCTGCTACTAGTGATCAGGCAGCCTTCATACTGAGCATACCAAAACGCAAATTACTTGATGAAACTCAGGAGACACTGCGTACATCTGCTTTCCCTAGCACCCATGTTAAGGAAAAATGGGCCAAGAATCTCTACATTGCCTCTATATGTTATGGGCGAACTGTTTGCTAG 2130 0.4521 MPELRSGARRSKRLGDLQPGPLPVDQGENWQQPAAPNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPVYNNVEVVANNNIVMEGGSGDKVAGAEEEPSTTPVPERVQVGNSPIYKIERKLGKGGFGQVYVGRRLSGGSDRTGPDAVEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSVGQQMSPNMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGSAEDKKLYLIDLGLASRWKDASSGLHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLVFLIKGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFVPAPFKQFLEAVTNMRFDEEPNYAKLISLFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASAANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWENGYRITSMAATSDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0338 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Gso16g0338 709 SUPERFAMILY Protein kinase-like (PK-like) 148 436 IPR011009 -
Gso16g0338 709 PANTHER CASEIN KINASE-RELATED 102 682 - -
Gso16g0338 709 MobiDBLite consensus disorder prediction 1 73 - -
Gso16g0338 709 PANTHER CASEIN KINASE-LIKE PROTEIN 102 682 - -
Gso16g0338 709 Pfam Protein kinase domain 148 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0338 709 ProSitePatterns Protein kinases ATP-binding region signature. 154 185 IPR017441 GO:0005524
Gso16g0338 709 SMART serkin_6 148 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0338 709 ProSiteProfiles Protein kinase domain profile. 148 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0338 709 CDD STKc_CK1 148 422 - -
Gso16g0338 709 Gene3D Transferase(Phosphotransferase) domain 1 117 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0338 Gso-Chr16 3837097 3844923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0338 122 308 EF-hand Containing Proteins AT5G66210 27.041 2.95e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gso16g0338 Pkinase 9.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0338 - - gmx:100801967 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0732 4 7266538 7273039 Gso16g0338 16 3837097 3844923 PCT
Gso6g0738 6 6815742 6820391 Gso16g0338 16 3837097 3844923 PCT