Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0306 ATGGCATATAAACACCACCCCTCAGTGTTTCTTGTGTTTGTTACTGTTTTACTTTCTATCCATTGCTCAGAGCAATTGCAATCCTCTCACTCTCAGACTCTTCTCAGAATTCAGCAGCTATTGAACTTTCCTGTTTCTTTAAGCAACTGGAACAACAACACAGACTTTTGCAACACAGACTCAAACTCTTCCTCCCTCAATGTAGTGTGCTATGGAGACACCATAACACAGCTTCACATAATAGGTGAAAGAAGAGATACACCACTCCCTCGAAATTTCTCAATAGATTCCTTTGTCACCACACTAGTGAGGCTTCCCAGTTTGAAAGTCCTCACATTGGTTTCTCTTGGTATTTGGGGTCCTCTACCTGGTAAGATAGCTCGTTTGTCATCCCTGGAAATATTTAACATGAGTTCAAATTTTCTCTATGGTTCCATTCCTCAGGAACTTACATTACTGTCAAGTCTTCAAACACTCATTTTTGACAACAACATGTTGGCTGATACGTTTCCTCGATGGATTGATTCACTTCAAGCCTTAACGGTGTTAAGTTTGAAGAATAACAAGTTCAATGGATCTCTGCCGAATTCACTTGGTAATGTGGAAAATTTGAGAACTCTTTCACTTTCTCATAATCACTTTTATGGTGTGGTGCCGGATTTAAGCGGTTTGACAAATCTTCAAGTGATTGAATTGGATGATAATGCTTTCGGACCACAGTTTCCTCAGCTCGGTCACAAGTTGGTTACACTAGTGCTAAGAAACAATAGGTTCAGGTCTGGTATTCCTGCTGAATTGAGTTCATACTATCAGCTCGAACGATTTGATATTTCATTGAATTCATTTGTGGGGCCTTTTCAGCCGGGATTGTTGTCACTTCCTTCCATTACTTATCTGAATATTTCATGGAACAAATTAACCGGGATGCTTTTTGAGAATCTGTCTTGCAATTCTGAGCTTGATGTAGTGGATTTGTCCTCAAATCTTTTGACTGGGAGCTTACCTAGATGTTTAGTGTCAAATTCCAGTGATAGCACTGTCCTGTATGCTAGAAATTGTCTAGACACCGTGAATCAAAATCAGCAGCCGCAGCCCTTTTGCCACACTGAAGCTTTAGCTGTGGGAATATTACCTGAGAGAAAGAAGCACAAACAAGTATCTACGGTAGTTCTTTCCCTTGGCATAGTAGGGGGGACTCTTGGAGGAGTAGCACTTGTTTTGCTAATTTTCTTTATTGTTAGAAGAGGAAATGACAGAAGCAAAACCAAGAATCCTCCAACAAGATTAATATCAGAAAATGCTGCTTCTGGTTACACATCTAAGTTGCTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTGGGAGCAGTTGGCCTGCCAACTTATCGAAGTTTCTCATTGGAAGAGATTGAATCAGCTACAAACTATTTTGACAGAGCTTCTTTAATGGGTGAAGATTCTTATGGGAAGATGTACAGAGGTCAGCTGAAGAATGGCTCACTTGTTGCTATTCGGTGTGTAGAAATGAAAAAGAGATACAGCACTCAAAACTTTGTGCAACACATAGAGCTGATATCAAAACTTAGGCATCGTCATCTAGTCAGCGCTGTTGGACACTGTTTTGAATGTTCTTTAGATGATTCAAGTGTCAGCAAAGTATTTCTTGTCTTCGAATATGTACCAAATGGCACGCTCAGGAATTGGATCTCTGATGAGCATGCTAGAAAATCCTTGAGTTGGACTCAACACATAGGAGCTGCAATTGGAGTGGCAAAAGGAATCCAGTTTTTGCATACAGGGATTGTCCCTGGTGTATATTCCAATGATCTGAAGATAGAAGATGTTTTATTGGATCAGAATCTTGTTGCAAAAATCAGCAGTTACCACCTGCCTTTGTTATCTAACATGGGAAAGGTTCGGTGTGGAAATTCTTCCAGTGGATTAAGAAATTCTAGCAATAGTAAAAGTGTAAAGCATGAAGATAAGGCTGATATATACGACTTTGGAGTGATACTACTCGAACTCATTCTAGGAAGACAAATAAAAACAGCAAATGATGCAGATGCTTTTAGGGATCTGTTGCAAGCAAGCTTAGGAGCTGATGAAGAGGGTAGGAGGAGCGTTGTTGATCCAGCATTTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATGGAGATTTGTGTGAGGTGCCTGGTTAAAGAGCCAGCAGATAGGCCATCTATAGAAGATGTTTTGTGGAACTTGCAGTTTGCATCTCAAGTACAAGATGCATGGAGAGGGGATTCTCAAAGTAGTGAAGGGTCACCAGGCTCAGAATCTCGAGGGCTACCCTTCCATTAG 2349 0.4049 MAYKHHPSVFLVFVTVLLSIHCSEQLQSSHSQTLLRIQQLLNFPVSLSNWNNNTDFCNTDSNSSSLNVVCYGDTITQLHIIGERRDTPLPRNFSIDSFVTTLVRLPSLKVLTLVSLGIWGPLPGKIARLSSLEIFNMSSNFLYGSIPQELTLLSSLQTLIFDNNMLADTFPRWIDSLQALTVLSLKNNKFNGSLPNSLGNVENLRTLSLSHNHFYGVVPDLSGLTNLQVIELDDNAFGPQFPQLGHKLVTLVLRNNRFRSGIPAELSSYYQLERFDISLNSFVGPFQPGLLSLPSITYLNISWNKLTGMLFENLSCNSELDVVDLSSNLLTGSLPRCLVSNSSDSTVLYARNCLDTVNQNQQPQPFCHTEALAVGILPERKKHKQVSTVVLSLGIVGGTLGGVALVLLIFFIVRRGNDRSKTKNPPTRLISENAASGYTSKLLSDARYISQTKKLGAVGLPTYRSFSLEEIESATNYFDRASLMGEDSYGKMYRGQLKNGSLVAIRCVEMKKRYSTQNFVQHIELISKLRHRHLVSAVGHCFECSLDDSSVSKVFLVFEYVPNGTLRNWISDEHARKSLSWTQHIGAAIGVAKGIQFLHTGIVPGVYSNDLKIEDVLLDQNLVAKISSYHLPLLSNMGKVRCGNSSSGLRNSSNSKSVKHEDKADIYDFGVILLELILGRQIKTANDADAFRDLLQASLGADEEGRRSVVDPAFRKACLDQSLKTMMEICVRCLVKEPADRPSIEDVLWNLQFASQVQDAWRGDSQSSEGSPGSESRGLPFH* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0306 782 Gene3D Phosphorylase Kinase; domain 1 449 560 - -
Gso16g0306 782 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 772 - -
Gso16g0306 782 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Gso16g0306 782 ProSiteProfiles Protein kinase domain profile. 478 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g0306 782 SUPERFAMILY Protein kinase-like (PK-like) 460 755 IPR011009 -
Gso16g0306 782 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Gso16g0306 782 Pfam Protein tyrosine and serine/threonine kinase 483 748 IPR001245 GO:0004672|GO:0006468
Gso16g0306 782 Gene3D Transferase(Phosphotransferase) domain 1 561 769 - -
Gso16g0306 782 Gene3D Ribonuclease Inhibitor 27 246 IPR032675 -
Gso16g0306 782 SUPERFAMILY L domain-like 65 357 - -
Gso16g0306 782 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 9 772 - -
Gso16g0306 782 Gene3D Ribonuclease Inhibitor 247 363 IPR032675 -
Gso16g0306 782 MobiDBLite consensus disorder prediction 761 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0306 Gso-Chr16 3489255 3495456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0306 43 780 Miscellaneous Gene Families AT3G03770 61.238 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gso16g0306 PK_Tyr_Ser-Thr 1.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0306 - - gmx:100786077 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0979 19 37076166 37082265 Gso16g0306 16 3489255 3495456 GST