Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0290 ATGGTGTACTGCAGTCACTGTGCCAAAAATGTCGCTGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCCGAGGAGCCTTCATTTGTTAAGAATGCAGCGGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGTGAGTACTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATTTAAGTTTCGGCCTTGGAGTTAATGATGAACATATGGCTGAACAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAACAAGTACATGCTGCTTGTCTCTACATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCATAGATATACCAAGAATTTGTTAAAGCGAGGGAGTAAGGCTGTTTCGGATACTGCACTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTCTTAAAATTGTCCATGTATGTGAAGCAACATTAACCAAACGATTGGTAGAATTTGAGGATACAGAGTCTTCTAGCTTGACAGTTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAAAATCCAACGATAATGCCAGAAGGTGGATTAAAAGGATGTATTTCAAAAGATCTACTGTGTGAGCACAAGGAGGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCATGCTATAAGGATTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCGTTCCAGCGTGCTGAGAGGGAAAGACTTAAAAAAACACTTCCAGAGGAGAGTGTCGATGAAGCATGTGCTTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCCTGCCTATGTGCCAGAAAGTATTGGGGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCACATAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATGAAGAAGTTGATTTGTACATTCATGATGAGGAGGGGAAGCATATCAAGAAGATACTGTGGGAAACAGCAAATAGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAGCTGCAGCAGCTAACAAGAAAGCTTTTGAGGCAAAATTTGAAAACTGTTCGGAGGATATACTAGCGGCAAGAGAGCTTGCTGCATCTTCTATTGAAGCTGTGGCAAAATCCAGAAAGGAAATGAGACAGAAACGAGCCTATGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAAATGTCTAATAAAAAAAGGAATTTGCAGGGTCTCAAATCTAAAGTCAATTTTGAACTCCTGAATGAATTGTTTGATGAAATGGAAAATACCGATGGTCTCAAGATACAGAAGAAAGTACGATTTGATTCGCCCCTAGATAAACATGACAATTTACCGTCCAAGATTGAGAACAAAAATGAAGATGAGATGGGATCAGTGGATGAATTCGAAGATGAAGGTGATATGGGGGAGATGTATCAAAATACTGAAAATATGGCTGATAAATATTTCCCTGAGGATGACGGTTTCAGCTATAATGACTATAATGATTATTACTGA 1863 0.4037 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQSKLSGNYVRTVQSEYSESRQRTLDRAYDEIKYLSFGLGVNDEHMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFEDTESSSLTVEELNTMAKEHEKNPTIMPEGGLKGCISKDLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESVDEACALANASNDQFKSHKEDLPAYVPESIGANVEHEATKDGKYDDSHREDESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAANKKAFEAKFENCSEDILAARELAASSIEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDEMENTDGLKIQKKVRFDSPLDKHDNLPSKIENKNEDEMGSVDEFEDEGDMGEMYQNTENMADKYFPEDDGFSYNDYNDYY* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0290 620 MobiDBLite consensus disorder prediction 599 620 - -
Gso16g0290 620 SUPERFAMILY Zinc beta-ribbon 2 43 - -
Gso16g0290 620 MobiDBLite consensus disorder prediction 561 583 - -
Gso16g0290 620 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Gso16g0290 620 Pfam Transcription factor TFIIB repeat 68 156 IPR013150 GO:0017025
Gso16g0290 620 Pfam Brf1-like TBP-binding domain 411 540 IPR011665 -
Gso16g0290 620 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 543 IPR029529 GO:0000126|GO:0000995|GO:0006383
Gso16g0290 620 MobiDBLite consensus disorder prediction 383 415 - -
Gso16g0290 620 CDD CYCLIN 173 248 IPR013763 -
Gso16g0290 620 SMART cyclin_7 176 259 IPR013763 -
Gso16g0290 620 SMART cyclin_7 76 158 IPR013763 -
Gso16g0290 620 MobiDBLite consensus disorder prediction 388 408 - -
Gso16g0290 620 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Gso16g0290 620 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Gso16g0290 620 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Gso16g0290 620 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Gso16g0290 620 MobiDBLite consensus disorder prediction 561 577 - -
Gso16g0290 620 Gene3D - 63 164 - -
Gso16g0290 620 CDD CYCLIN 89 143 IPR013763 -
Gso16g0290 620 Gene3D - 173 264 - -
Gso16g0290 620 Gene3D Single helix bin 404 453 - -
Gso16g0290 620 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 543 IPR000812 GO:0006352|GO:0070897
Gso16g0290 620 SUPERFAMILY Cyclin-like 172 266 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0290 Gso-Chr16 3294823 3308653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0290 1 520 Inorganic Solute Cotransporters AT2G01280 42.430 1.34e-110 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0290 K15196 - gmx:100817609 1197.57