Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0286 ATGGCAGGGCGGTTGGTGTTGGACGGCGGTGTTCGCGTGGAAGATAGTGGCAGCATTGTTGGATGCTCAAACGACGGTTCTCGGCGCCGTTTCGAGAAGTTGGTTGCTGAGTTCACGAGCGAGATCTGTGGGAGTGATTCTTTTTTGCCTTTTCCGCCAATGTTGGGTGATGGGAAGACTGTGGATTTGTATAAGCTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGACGCCGTTTGCAATGGCAAGTTGTGGGATACCGTTGGGGAGGAGTCTGGGTTGGGTGTGAGTATTGGTTCTTCCGTGAAGTTGGTGTATAGTAAGTATTTGAGTGCTTTGGATGCGTGGTTGAAGAAGGTTGCCGAGAGTAAGGTGTCCCCTGAGTGTTGTGTGGTGGACGATAGGGACATGTTTGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGTCGAAGGGTTGTTGTCCAGTTGCGCTGAGGATGATGCGGCTCGAGAGGAGGAGGTAAAGGGTGGAGGTGATGATGATGATGATAATGTGGATGGGAGGAAGTTGTGTGGTGATGGAAATGGAGGGTGTCCTGATTCGGAGGTGCTGGACTGTGAGAAGAATGAGTCGGTTCTTGGAAATGTGGGTGGGGGAAACAAGGGTGGTGGAGGTGAAGGAGATGGAAATGGAGGGTGTCGTGATTCGGAGATGCCAGACCGTGAGGTGAATGAGTCGGTGAATGGAAACTTGGGTGGGGGGAATGATGCAATGGAAGCGGGGGAAGAGTTTGATGGAGGGAAAATGTCTAAAGAGCAGGTGGTGGATGTGTTGGATGGGGCGAACTACAGTGTGGCTGGATTGTTGAGTGGAGGCGAGAAGTGTGGCGACAATGATGGTAGGGGCTTGGTGATGGATCCACCTGGTGGGGATAGTGATGATCGAAAGAGGAAGAGAGACATGTTGGATTTGTCTGATGGGGATAGTGATAGTTCTGATTGTAAGAGGATGCGAGAGTCTGCGTTGGATATGCTGAGCTGGGTTACAGGTGCTGCAAAGAATCCCTGTGATCCTGAAGTTGGTTCAATACCTGAAAAGGCAAAGTGGAAGTCTCAAAGTAATCAGGAGGTGTGGAAGCAAGTGCTGTTGTTTCGAGAGGCAGCGTTTCTCAAAAGAGGTTCTGATACAAGCAGTGAACAACGTAGCTGGCAGAGTCAGAAGATGCACCCTTTCTTGTATGAAGATCATCTTGGGATAAACTACAATCTTAGGGAGAGGTTGAAATGTGACAAGAAGATTTTATTTGGCCAATCTACACCGTCTGCACGAAGTTCTTCTGATTCATCTGTAGGAATTGAGAACAGAACAACGAGTCCTAATACTGAAGATCCCTATGATGCAAATTCAGGTCTTGACAGATGTGCCACAGTACGCATTCCTTTGGGGGGAAATCGTCAAGCTGAAATACCAGAATGGACCGGTGATATTTCTGAAGGTTATTTGAAGTTTTCAGGGACCTCAATATGGCCAGTGGCAACAGTAAATACCAGACTTCGTATTGAAAAGGACCCCATAGGGAAGGGAAGACAAGATTCATGCAGCTGCTCTGCACCAGGTTCTGTTGAGTGTGTAAGATTCCACATTACCGAGAAAAGGGCTAAAGTTCATCTGGAATTGGGTGCAGCATTTTACGACTGGAATTTTGATCAGGTAGGTGAAGACGTTAAGCTATTGTGGACAGAAGAAGAAGAGAAAAAATTCGAGGATGCGATACGATCAAACCCTCCATCACCTGAGACATATTTCTGGGACCATATCTTTAGGGCATTTCCTACAAAGAGCAGGGCAGATTTAGTTAGTTACTACTTCAATGTCTTTATTTTGGAGCGCAGAGGATACCAAAATAGGCATACTCCCGATGACATTAACAGTGATGACGATGACGATGAAGCTGGACCACTGAGGAATGTTTTCGGACATCAGACACCAAATTCTGGATATCAGGCACCGAATCCGCGCGGTTCCATCTTATTAACCCCCAAAAAGTCACAAACAAAGAAAAAGTAA 2046 0.4746 MAGRLVLDGGVRVEDSGSIVGCSNDGSRRRFEKLVAEFTSEICGSDSFLPFPPMLGDGKTVDLYKLFLVVRGKGGYDAVCNGKLWDTVGEESGLGVSIGSSVKLVYSKYLSALDAWLKKVAESKVSPECCVVDDRDMFGRRLMELQAEVEGLLSSCAEDDAAREEEVKGGGDDDDDNVDGRKLCGDGNGGCPDSEVLDCEKNESVLGNVGGGNKGGGGEGDGNGGCRDSEMPDREVNESVNGNLGGGNDAMEAGEEFDGGKMSKEQVVDVLDGANYSVAGLLSGGEKCGDNDGRGLVMDPPGGDSDDRKRKRDMLDLSDGDSDSSDCKRMRESALDMLSWVTGAAKNPCDPEVGSIPEKAKWKSQSNQEVWKQVLLFREAAFLKRGSDTSSEQRSWQSQKMHPFLYEDHLGINYNLRERLKCDKKILFGQSTPSARSSSDSSVGIENRTTSPNTEDPYDANSGLDRCATVRIPLGGNRQAEIPEWTGDISEGYLKFSGTSIWPVATVNTRLRIEKDPIGKGRQDSCSCSAPGSVECVRFHITEKRAKVHLELGAAFYDWNFDQVGEDVKLLWTEEEEKKFEDAIRSNPPSPETYFWDHIFRAFPTKSRADLVSYYFNVFILERRGYQNRHTPDDINSDDDDDEAGPLRNVFGHQTPNSGYQAPNPRGSILLTPKKSQTKKK* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0286 681 MobiDBLite consensus disorder prediction 289 327 - -
Gso16g0286 681 MobiDBLite consensus disorder prediction 301 327 - -
Gso16g0286 681 MobiDBLite consensus disorder prediction 160 181 - -
Gso16g0286 681 Gene3D - 19 127 IPR036431 GO:0003677
Gso16g0286 681 Pfam ARID/BRIGHT DNA binding domain 50 112 IPR001606 GO:0003677
Gso16g0286 681 SUPERFAMILY Homeodomain-like 572 620 IPR009057 -
Gso16g0286 681 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 50 680 - -
Gso16g0286 681 MobiDBLite consensus disorder prediction 651 674 - -
Gso16g0286 681 SUPERFAMILY ARID-like 29 122 IPR036431 GO:0003677
Gso16g0286 681 MobiDBLite consensus disorder prediction 431 458 - -
Gso16g0286 681 CDD SANT 572 619 IPR001005 -
Gso16g0286 681 MobiDBLite consensus disorder prediction 207 260 - -
Gso16g0286 681 SMART ARID_2 22 114 - -
Gso16g0286 681 Pfam Myb-like DNA-binding domain 572 618 IPR001005 -
Gso16g0286 681 SMART sant 568 621 IPR001005 -
Gso16g0286 681 Gene3D - 572 634 - -
Gso16g0286 681 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 50 680 - -
Gso16g0286 681 MobiDBLite consensus disorder prediction 431 462 - -
Gso16g0286 681 ProSiteProfiles ARID domain profile. 25 118 IPR001606 GO:0003677
Gso16g0286 681 MobiDBLite consensus disorder prediction 629 681 - -
Gso16g0286 681 CDD ARID 27 114 - -
Gso16g0286 681 SMART bright_3 26 119 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0286 Gso-Chr16 3242339 3246763 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso16g0286 ARID 1.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0286 - - gsj:114390964 1315.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0602 7 6383807 6387874 Gso16g0286 16 3242339 3246763 GST
Gso18g1957 18 52062649 52068839 Gso16g0286 16 3242339 3246763 PCT
Gso9g2125 9 45535859 45541940 Gso16g0286 16 3242339 3246763 PCT
Gso16g0286 16 3242339 3246763 Gso18g1957 18 52062649 52068839 PCT
Gso16g0286 16 3242339 3246763 Gso9g2125 9 45535859 45541940 PCT