Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0284 ATGCATAAAGTTTGGTGGCGACTGATCCTTTTTCGATCCCACATAACCAAAGAGAATGACAATATCACTGGTAGGTTTGATTATTTAACAGAAAAGGACTGCTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACACCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCGTGAGTCTTTAACATCTAATGATGGTAGGGCTATGTCCCTCACTACTGGATTGCTGGTAAGCTTGAACCTGGAAACTTCCACACCTGATACATACCAGTCCCCTCCCGCACCTCCACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGTAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCGATGATCTTGAAGAATCTGACTGTAAAGCTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGAATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGATGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGCAATCAGGAGATGATATTTGACCAGACATTGAACTAG 684 0.4152 MHKVWWRLILFRSHITKENDNITGRFDYLTEKDCWKMGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNDGRAMSLTTGLLVSLNLETSTPDTYQSPPAPPPYDMVLGGPASTDSESGRVTVSGSSFETLITCDDLEESDCKAKANSAPISPSKAELSKSKEFHALVTEEEDGCPICLDEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICNQEMIFDQTLN* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0284 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Gso16g0284 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 227 - -
Gso16g0284 227 SUPERFAMILY RING/U-box 167 223 - -
Gso16g0284 227 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Gso16g0284 227 Pfam Ring finger domain 176 217 IPR001841 -
Gso16g0284 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 37 227 - -
Gso16g0284 227 SMART ring_2 176 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0284 Gso-Chr16 3219121 3223552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0284 37 227 C3H Transcription Factor Family AT4G00335 60.209 2.19e-79 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0284 - - gmx:100804435 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0600 7 6359241 6363624 Gso16g0284 16 3219121 3223552 GST
Gso18g1952 18 52023349 52027209 Gso16g0284 16 3219121 3223552 PCT
Gso9g2121 9 45494404 45498157 Gso16g0284 16 3219121 3223552 PCT
Gso16g0284 16 3219121 3223552 Gso18g1952 18 52023349 52027209 PCT
Gso16g0284 16 3219121 3223552 Gso9g2121 9 45494404 45498157 PCT