Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0279 ATGGGTTTTCCGGTGGGTTACGCGGAGGTGTTCTTCCCGAACCCGTTCCTGCACACGCTGGCCCTCCTCGGCCTCCTCCGAAACCTCGTATTCTTCCTCCTCCACCTCCTCGGATTCTCCGACTTCCTCGAAACCGAGGTCGCCTGGCCGGACCACCCCCACCCCTCCGACGAGGCTGCGGCGGCGCGGCCCCCATCCGCGTCGGCGCTCCTGATCCGCGACCTCCTTCCCGTCGCCAAGTTCGGAGACTCCGACGTTGGCGCCCAACAAAACGGCTTGTGCGCAGTGTGCCTGTTCGAGTTCTCCGAGGAGGAGGAGGTTCGGTGCCTGCGCAACTGCAAGCACATTTTCCACCGCACATGCGTGGACCGTTGGATCGACCACGATCAGAAAACGTGCCCTCTCTGTAGGACCCCCTTTGTGCCTGATGATATGCTTGATGATTATAATCAACGACTCTGGGCTGCTTCTGGGGTTAACGAGTTTTACGCCGATTACACTTCTTCCTTCTGA 513 0.6004 MGFPVGYAEVFFPNPFLHTLALLGLLRNLVFFLLHLLGFSDFLETEVAWPDHPHPSDEAAAARPPSASALLIRDLLPVAKFGDSDVGAQQNGLCAVCLFEFSEEEEVRCLRNCKHIFHRTCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGVNEFYADYTSSF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0279 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 142 IPR013083 -
Gso16g0279 170 PANTHER BRH1 RING FINGER PROTEIN 1 166 - -
Gso16g0279 170 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Gso16g0279 170 Pfam Ring finger domain 94 137 IPR001841 -
Gso16g0279 170 SMART ring_2 94 136 IPR001841 -
Gso16g0279 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 166 - -
Gso16g0279 170 SUPERFAMILY RING/U-box 93 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0279 Gso-Chr16 3147852 3148576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0279 1 169 C3H Transcription Factor Family AT1G63840 43.678 1.70e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0279 K16281 - gmx:100500261 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0591 7 6266251 6267042 Gso16g0279 16 3147852 3148576 GST
Gso18g1949 18 51998363 51999171 Gso16g0279 16 3147852 3148576 PCT
Gso9g2118 9 45472893 45473695 Gso16g0279 16 3147852 3148576 PCT
Gso16g0279 16 3147852 3148576 Gso18g1949 18 51998363 51999171 PCT
Gso16g0279 16 3147852 3148576 Gso9g2118 9 45472893 45473695 PCT