Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0278 ATGCAAATCACTCAGAAGCAACTAGTGCTGACAAGGAATTGGGATAATTCAATGGGATCTTCCAATGAAGGATCTTCTTCTTCCACCCTAACCTCCGGAAGGTCATGGTCCAACCATGTTTTCTTGAGTTTTCGGGGTGATGACACACGCAAAGGTTTCACTGGCCATCTTTTTGCTTCCCTAGAGAGAAGGGGGATCAAAACATTCAAGGATGATCATGATCTTCAGAGGGGGAAATTGATATCAGTGGAACTCATGAAAGCCATTGAAGGGTCCATGCTTGCACTTATCATTCTCTCACCAAACTATGCCTCCTCAACATGGTGTTTGGATGAGCTCAAAAAGATTCTAGAGTGCAAGAAAGAAGTTTTTCCAATCTTCCATGGTGTAGACCCCTCTGATGTGAGGCATCAGAGAGGAAGCTTTGCAAAGGCTTTCAGTGAACATGAAGAGAAATTCAGAGAAGACAAGAAGAAGTTGGAAAGATGGAGACATGCCTTGAGAGAAGTTGCAAGCTACTCTGGTTGGGACTCCAAGGAACAGCATGAGGCAACATTGATTGAAACAATTGTTGGACACATACAGAAAAAAATAATTCCCAGGTTGCCATGTTGCACAGATAACCTTGTTGGGATTGATTCACGGATGAAGGAAGTGTATTCACTCATGGGCATAAGTTTAAATGATGTTCGCTTCATAGGACTATGGGGCATGGGAGGCATAGGTAAGACAACCATTGCTAGATTTGTCTACGAAGCAATCAAAGGGGATTTCAATGTTAGTTGCTTTCTTGAAAACATTAGAGAGGTGTCTAAGACAAATGGCTTAGTTCACATTCAAAAGGAACTTCTTTTTCATCTTAATGTAAGAAGCAGTGATTTTTATAATCTTCATGATGGGAAAAATATAATAGCAAATTCTTTAAGCAACAAAAAGATTCTTCTTGTTCTTGATGATGTAAGTGAGTTAAGCCAACTGGAGAATTTGGCTGGAAAGCAAGAATGGTTTGGTTCAGGGAGTAGAGTAATAATCACAACTAGAGATAAGCACCTGCTAAAGACGCATGGAGTGCATCTGACTTGTAAGGCTAAAGGCTTAGCCCAAAATGAAGCCCTGAAGCTCTTTTGTTTGAAAGCATTTAAGCAAGATCAACCTAAAGAAGAGTATCTGAATTTGTGCAAAGAAGTGGTTGAATATGCAAGAGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTTATGGAAGAACCGTTGAGGTTTGGCATAGTGCTTTAGAACAAATAAGAAGTTTTCCGCACTCCAAAATCCAAGACACACTGAAAATTAGTTATGATAGTTTACAACCTCCGTATCAGAAAATGTTTTTAGATATTGCCTGTTTCTTCAAAGGGATGGACATAGATGAAGTGAAAAATATCTTAAAAAACTGCGGTTATCATCCCGAAATTGGAATTGACATTTTGATCGAAAGATGTTTGGTAACTCTGGATAGGATGAAGAAGTTGGGGATGCATGATTTGCTACAAGAAATGGGAAGGAATATTGTATTTCAAGAATCTCCAAATGATCCAGGCAAACGTAGTAGATTGTGGTCTCAAAAAGACATTGATTATGTGTTGACAAAAAACAAGGGAACTGATGAAATTCAAGGCATAGTTCTGAACTTAGTTCAACCGTGTGATTATGAAGGACGCTGGAGCACTGAAGCCTTCTCCAAGACAAGTCAACTCAAGTTACTCATGTTATGTGATATGCAGCTTCCCCGTGGCCTCAACTGCCTTCCTAGTTCACTGAAAGTTCTTCACTGGAGAGGATGTCCTTTGAAAACCCTGCCACTTAATAATAAACTAGATGAAGTTGTTGACCTCAAATTGCCTCATAGCCGAATAGAACAACTTTGGCGTGGGACAAAGCTTCTGGAAAAGCTAAAGTCCATCAACTTGAGCTTTTCCAAGAACCTAAAGCAGTCCCCGGACTTTGGTGGGGCTCCAAATCTTGAATCATTGGTTCTAGAAGGTTGCACAAGTTTGACTGAAGTTCATCCATCCCTTGTACGCCATAAGAAACTTGCTATGATGAATTTAAAAGACTGTAAAAGGCTCAAAACTCTTCCAAGTAAAATGGAGATGAGTTCCTTGAAAGATTTAAACCTTTCTGGTTGCTCTGAATTTAAATATCTTCCAGAGTTTGGGGAAAGCATGGAACATTTGTCAGTGCTTTCTTTAGAGGGGACTGCTATAGCAAAACTACCCTCTTCACTGGGATGTCTAGTTGGCCTTGCTCATTTGTATTTGAAGAATTGCAAAAATCTTGTTTGCCTTCCAGATACCTTTCATAACTTAAACTCCCTCATAGTTCTGAATGTTTCTGGCTGCTCAAAACTTGGTTGCTTACCAGAGGGTTTAAAGGAAATCAAGTCTTTGGAGGAACTTGATGCAAGTGGAACTGCTATTCAAGAGCTACCTTCATCTGTCTTTTATTTGGAAAACCTAAAAAGTATCTCATTTGCTGGGTGCAAAAAGCCAGTATCTAACTCAGTAAGTGGATTTCTTCTCCCCTTTCAGTGGGTATTTGGGAATCAACAAACTCCTACTGCATTTAGATTACCACCTTCTAAACTGAATCTACCCTCTTTGATGAGAATAAATTTAAGTTACTGCAATCTATCTGAAGAGTCATTCCCAGATGGTTTTCGTCACTTATCTTCATTGCAGTTTCTAGATCTCACTGGCAACAATTTTGTTACCCTACCAAGTTGCATTTCGAACCTCACAAAGCTTGAAATTCTTCTCCTAAACTTGTGCAAAAAACTTAAAAGGTTGCCAGAGCTCCCTTCAAGAATGAAACATTTGGATGCAAGCAATTGCACTTCATTGGAAACTTCCAAATTCAATCCATCCAAGCCATGCAGTCTCTTTGCATCATCACCTTCAAATTTTCATTTTTCGAGAGAATTGATACGCTATCTTGAGGAACTCCCTCTTCCCAGAACAAGATTTGAGATGTTAATCCCAGGGAGTGAAATTCCATCATGGTTTGTCCCTCAAAAATGTGTTTCATTAGCTAAAATACCAGTCCCTCATAATTGCCCTGTAAATGAATGGGTGGGATTTGCTCTGTGCTTCCTATTAGTAAGTTATGCAAATCCTCCTGAGGCGTGCCATCATGAAGTTGAGTGCTACTTGTTTGGACCTAATGGTAAGACGATTATCAGTTCCAGGAATTTACCTCCCATGGAGCTAGATTGCCCTCACCTTTATATTCTCTACTTGTCCATTGATAAATACCGTGACATGATTTGTGAAGGTGTTGTCGGCAGTGAAATTGAATTTGTATTGAAAAGTTATTGTTGCCAATCATTGGAAATAGTGAGGTGCGGATGTCGTTTGGTATGTAAGCAAGATGTTGAAGATATTTATGAAAATAGTATCATTTCTTCTAGTGAAGAGATCGGAGTGGCCAGTGAGAAGGTGCGAATTATCTAA 3489 0.3958 MQITQKQLVLTRNWDNSMGSSNEGSSSSTLTSGRSWSNHVFLSFRGDDTRKGFTGHLFASLERRGIKTFKDDHDLQRGKLISVELMKAIEGSMLALIILSPNYASSTWCLDELKKILECKKEVFPIFHGVDPSDVRHQRGSFAKAFSEHEEKFREDKKKLERWRHALREVASYSGWDSKEQHEATLIETIVGHIQKKIIPRLPCCTDNLVGIDSRMKEVYSLMGISLNDVRFIGLWGMGGIGKTTIARFVYEAIKGDFNVSCFLENIREVSKTNGLVHIQKELLFHLNVRSSDFYNLHDGKNIIANSLSNKKILLVLDDVSELSQLENLAGKQEWFGSGSRVIITTRDKHLLKTHGVHLTCKAKGLAQNEALKLFCLKAFKQDQPKEEYLNLCKEVVEYARGLPLALEVLGSHLYGRTVEVWHSALEQIRSFPHSKIQDTLKISYDSLQPPYQKMFLDIACFFKGMDIDEVKNILKNCGYHPEIGIDILIERCLVTLDRMKKLGMHDLLQEMGRNIVFQESPNDPGKRSRLWSQKDIDYVLTKNKGTDEIQGIVLNLVQPCDYEGRWSTEAFSKTSQLKLLMLCDMQLPRGLNCLPSSLKVLHWRGCPLKTLPLNNKLDEVVDLKLPHSRIEQLWRGTKLLEKLKSINLSFSKNLKQSPDFGGAPNLESLVLEGCTSLTEVHPSLVRHKKLAMMNLKDCKRLKTLPSKMEMSSLKDLNLSGCSEFKYLPEFGESMEHLSVLSLEGTAIAKLPSSLGCLVGLAHLYLKNCKNLVCLPDTFHNLNSLIVLNVSGCSKLGCLPEGLKEIKSLEELDASGTAIQELPSSVFYLENLKSISFAGCKKPVSNSVSGFLLPFQWVFGNQQTPTAFRLPPSKLNLPSLMRINLSYCNLSEESFPDGFRHLSSLQFLDLTGNNFVTLPSCISNLTKLEILLLNLCKKLKRLPELPSRMKHLDASNCTSLETSKFNPSKPCSLFASSPSNFHFSRELIRYLEELPLPRTRFEMLIPGSEIPSWFVPQKCVSLAKIPVPHNCPVNEWVGFALCFLLVSYANPPEACHHEVECYLFGPNGKTIISSRNLPPMELDCPHLYILYLSIDKYRDMICEGVVGSEIEFVLKSYCCQSLEIVRCGCRLVCKQDVEDIYENSIISSSEEIGVASEKVRII* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0278 1162 SUPERFAMILY RNI-like 775 1034 - -
Gso16g0278 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 459 IPR027417 -
Gso16g0278 1162 PRINTS Disease resistance protein signature 232 247 - -
Gso16g0278 1162 PRINTS Disease resistance protein signature 307 321 - -
Gso16g0278 1162 PRINTS Disease resistance protein signature 400 414 - -
Gso16g0278 1162 PRINTS Disease resistance protein signature 709 725 - -
Gso16g0278 1162 SMART till_3 37 173 IPR000157 GO:0007165
Gso16g0278 1162 Gene3D Ribonuclease Inhibitor 733 849 IPR032675 -
Gso16g0278 1162 Gene3D Ribonuclease Inhibitor 565 732 IPR032675 -
Gso16g0278 1162 Pfam C-JID domain 1005 1138 IPR045344 -
Gso16g0278 1162 Pfam Leucine Rich Repeat 622 639 IPR011713 -
Gso16g0278 1162 Pfam TIR domain 39 210 IPR000157 GO:0007165
Gso16g0278 1162 Gene3D Ribonuclease Inhibitor 860 1052 IPR032675 -
Gso16g0278 1162 SMART LRR_typ_2 902 925 IPR003591 -
Gso16g0278 1162 SMART LRR_typ_2 806 829 IPR003591 -
Gso16g0278 1162 SMART LRR_typ_2 735 758 IPR003591 -
Gso16g0278 1162 SMART LRR_typ_2 877 901 IPR003591 -
Gso16g0278 1162 Pfam NB-ARC domain 229 448 IPR002182 GO:0043531
Gso16g0278 1162 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 176 IPR035897 -
Gso16g0278 1162 Gene3D - 365 449 IPR042197 -
Gso16g0278 1162 SUPERFAMILY "Winged helix" DNA-binding domain 435 541 IPR036390 -
Gso16g0278 1162 Gene3D - 198 358 IPR027417 -
Gso16g0278 1162 ProSiteProfiles TIR domain profile. 36 198 IPR000157 GO:0007165
Gso16g0278 1162 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 748 961 IPR044974 GO:0006952
Gso16g0278 1162 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 44 768 IPR044974 GO:0006952
Gso16g0278 1162 PANTHER TMV RESISTANCE PROTEIN N-LIKE 748 961 - -
Gso16g0278 1162 PANTHER TMV RESISTANCE PROTEIN N-LIKE 44 768 - -
Gso16g0278 1162 SUPERFAMILY L domain-like 519 841 - -
Gso16g0278 1162 Gene3D - 32 197 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0278 Gso-Chr16 3127783 3136998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0278 45 854 WRKY Transcription Factor Family AT4G12020 31.894 3.55e-107 369