Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0273 ATGGCAGCTGTTAGGTCTTCCTCTGTAAGACGGTTGGGGAGCACAATTAAGGGTTCTTTTAGTATGGAATTAGTTCACCATAGTATGTGTATGAATCTTGCAAGGTTTCCGAGTGATTCGTTTAATGATCCTTATTACAAAAGAGAGTTACAGTTTGCTAAGAATCAGTTTAGTAATTTGGCTTCTGAATCCCTTGGAAGTAGTCATCACTTTGGTACTAGAGCCAATGTATTGGTTAAACCAACGTTCTCTGGTTATTGTTTTTGGAGTTCCCTTCCTTTTGCTTCCATGAGCAACCACGTTTTGAATCGTCGAATGTATTCATCGTCGTCGGTGGGTGACAAAGGAAGTAGAGATGGTGGTACAGAAGTTTCTGCTGGTTCTGGTGCGAGTGATATGAATACTGGTGGTGATTCTGTTGTTGGGGGTGATTGGGCTGAGAGGATTAAAGATGCTTGGAAGAGTGTGGCAGAGGCAGCATCATATGCTGGAGATAAGGTTAAAGAAACTTCTGATGATCTCACTCCATATGCTCAGCAGTTGCTTGATTCACACCCGTATCTTGACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACCATAATAGCTTGGTTCTTGCTGCCTAGGATTTTGAGGAAATTTCACAAATATGCAATGCAAGGTCCTGTTTCTCTATTGCCAGCAAGCGTGGCTGGGGAGCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAGGATCCAGTGCGATATTTAGTTACCTTCATTGCATTCTCACAAATTGGTGTTATGGTGGCTCCAACAACTATAACCTCACAATATCTTGCTCCCGTTTGGAGGGGTGCAGTGATTGTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGTCATTGTCTAGTCAAAGTTTACTTGGGCTTGATAGGGAGAAAGTGTTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGGATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTGACTGTTGGTGGTATAGGAGGTGTGGCTACTGCTTTTGCTACCAAGGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCGATAGAGGGTCAAGTTGTGGAAATGGGTCTTACTAGCACGTCATTGCTGAGTTCAGAGAAGTTCCCAGTCATTGTGCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCCCGTGCTGAATATCGCGCCATTATTACTAAAATTCCACTGCAAACTGAGGATTTAAGTAAGATTCCCCAGATATCAGATGATGTAAAAAGCATGCTCAGATCAAATGCAAATGTTTTCTTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACATATGCGCAAAGATGAATTATACTCTGCAGAACAAGATATTCTCTTGCAGGCAGTTCAAATCATTAAGAATCATGGGGTTGCTCTTGGCAGCACATGGCAAGACACGTCTTCTAAATGA 1611 0.4159 MAAVRSSSVRRLGSTIKGSFSMELVHHSMCMNLARFPSDSFNDPYYKRELQFAKNQFSNLASESLGSSHHFGTRANVLVKPTFSGYCFWSSLPFASMSNHVLNRRMYSSSSVGDKGSRDGGTEVSAGSGASDMNTGGDSVVGGDWAERIKDAWKSVAEAASYAGDKVKETSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATIIAWFLLPRILRKFHKYAMQGPVSLLPASVAGEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPVWRGAVIVSFVWFLHRWKTNVFARSLSSQSLLGLDREKVFALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFATKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTSTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQTEDLSKIPQISDDVKSMLRSNANVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRKDELYSAEQDILLQAVQIIKNHGVALGSTWQDTSSK* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0273 536 Pfam Mechanosensitive ion channel 323 525 IPR006685 GO:0016020|GO:0055085
Gso16g0273 536 Gene3D - 381 429 IPR023408 -
Gso16g0273 536 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 278 364 IPR011014 GO:0016020
Gso16g0273 536 SUPERFAMILY Sm-like ribonucleoproteins 365 430 IPR010920 -
Gso16g0273 536 MobiDBLite consensus disorder prediction 109 137 - -
Gso16g0273 536 Gene3D - 276 380 - -
Gso16g0273 536 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 89 532 - -
Gso16g0273 536 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 89 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0273 Gso-Chr16 3097086 3102443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0273 145 534 Mechanosensitive Ion Channel Family AT4G00290 65.385 0.0 563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0588 7 6212225 6216616 Gso16g0273 16 3097086 3102443 GST