Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0265 ATGGTGTCGGTGAACCCAAACCCCGCTCAAGGCTTCTACTTCTTCGATCCCTCCAACATGACCCTTCCCGGCGTCAACAATCTTCCACCGCCGCCGCCGCCGGCTCCGGCTGCTCCCTCCGCCGTCGAGGATCCGAATAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAAAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAACTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCATTGAACCTGCATACATTTATAGCCCAGATTCTTCATCTGTGCTTGGAACTCCAGTTACTAACATGCCTTTATCATCTTGGAATTATAATACTACACCACAACCAGGCAATGTGCCACAAGTGACCAGAGATGACATGGGATTGACTGGAGCTGGACAAGCTGCTCCTCTTAATTGTTGCTACAGCAGTAGTAATGAGAGCACCCCTCCGACTTGGCCTCGTAGCAAAAGGATTAATCAAGGTGACCAGGACAAGCCAATTAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTCGATCCAAATTCAACTAATCACCTACAGAAACTACAACAGATGGACCCAATAAATGTGGAAACGGTATTGTTGTTGATGACAAATCTCTCCGTCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAGGCTGCTTTCATCATATGATACCGACTCTGACAAGTCGAAGTTTGTTAATATTTGCAGCAAATCCTTCACCAATAAATCCGAGAGTGCTGTTTTGTCTGCTTAG 999 0.4505 MVSVNPNPAQGFYFFDPSNMTLPGVNNLPPPPPPAPAAPSAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAARPYPQKAPKTPTVSQVMGPLQSSSAFIEPAYIYSPDSSSVLGTPVTNMPLSSWNYNTTPQPGNVPQVTRDDMGLTGAGQAAPLNCCYSSSNESTPPTWPRSKRINQGDQDKPIKVMPDFAQVYSFIGSVFDPNSTNHLQKLQQMDPINVETVLLLMTNLSVNLMSPEFEDHKRLLSSYDTDSDKSKFVNICSKSFTNKSESAVLSA* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0265 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Gso16g0265 332 MobiDBLite consensus disorder prediction 24 40 - -
Gso16g0265 332 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Gso16g0265 332 CDD SANT 61 104 IPR001005 -
Gso16g0265 332 MobiDBLite consensus disorder prediction 215 237 - -
Gso16g0265 332 MobiDBLite consensus disorder prediction 24 62 - -
Gso16g0265 332 MobiDBLite consensus disorder prediction 215 229 - -
Gso16g0265 332 ProSiteProfiles SANT domain profile. 57 110 IPR017884 -
Gso16g0265 332 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Gso16g0265 332 MobiDBLite consensus disorder prediction 108 142 - -
Gso16g0265 332 Gene3D - 62 109 - -
Gso16g0265 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Gso16g0265 332 SMART sant 58 106 IPR001005 -
Gso16g0265 332 MobiDBLite consensus disorder prediction 44 62 - -
Gso16g0265 332 PANTHER SWI/SNF COMPLEX-RELATED 2 327 - -
Gso16g0265 332 PANTHER MYB TRANSCRIPTION FACTOR 2 327 - -
Gso16g0265 332 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0265 Gso-Chr16 3034594 3042198 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso16g0265 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0265 - - gmx:778090 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0575 7 6099911 6106187 Gso16g0265 16 3034594 3042198 GST
Gso18g1933 18 51762473 51767994 Gso16g0265 16 3034594 3042198 PCT
Gso9g2104 9 45344816 45348839 Gso16g0265 16 3034594 3042198 PCT
Gso16g0265 16 3034594 3042198 Gso18g1933 18 51762473 51767994 PCT
Gso16g0265 16 3034594 3042198 Gso9g2104 9 45344816 45348839 PCT