Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0261 ATGGCGGACTCCGGCAGTGACTTCGCCGGCATCATTTGTTCGATCTGCTACGAACCCCTCAACCCCATTAACGAGGATCTTCAATCGGTCTCCATCTGTGGCCACGTTTTTCACGAGCTTTGTCTACAGCAGTGGTTCGAGTACTCTTCGAAAGGGAAGAAGCACACTTGCCCCATTTGCAAACAGGGTTGCAGGGCCAGTGACGCGTGCAGGCTCTATTTTCAGTCAGTGGGAGATGCGAACAATAGTGTGAAGCCTTCGAAGTGCTTTGAACTTGAGGAAGATGCTGGGGTTCTGCGTAGGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAATTCTCAGGTTGAAGGGCAAACAAAGGAGTTAGAAGGACTCAATGAGGAGCTTTGTACTTGCAAGGAGCAGGCAAAGATAGAGACAGCTTTAAAGAATGAGGCTTTAAATCAAAAAGCATCTATACAATTCCAGCTTCAAATGAAATCAGAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTAAAAGAAAGGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTATCTGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTAAAGACACAATAGATACATTGAAAAGATCTCTGGTCATGCGGAATAGGAGTTACAAAGAATTGATGGCCAAGTGCAATATTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAGGCTAAAGAGAAGATCACAAAACTGAAGGAGAGGGTACAAGAACTGGAGACATTAGCTGAATCAAAAGAGAACAAATATCTGAGGTCTCTGAAACTTTCAAAAATAACAAAGAGTTCAAAGAATCTCGAAGAAAACATCAAATCTGATTCTGAGGTATTGACAGCGTGCAAATTTTCATCAAAAGAACAAAGCAAACAAATTTCAATACCCAAATCTGGAATAGACCTGACTGCAAACAACAACAGTAAATCTTTTCAATCTTTCAAGATAGAGAACTCCAATGTTACTAAAAATAAGACTGTGAATATTAGTAATGGAAGTAGAAGTACCTTTTCTCTTGATATAAAAAGAGAGTATATCTCAATTGATGACAATGATTCAGAAGGCACTAATGCTTTGCAAGGATGTTCAAAACACAACTACAAAGATCAAGACTGGGATGATATTGCTTTTAGCAAGCCTTCTCTTGTGAAGCTAGAGCCTGTGTCTGGCATAAAGGCTGAAACATCATTGCAAGGAAAATGTACTTTGGCTGAGTCTCCCAGAGTTGATATTGACATTGACATGGCTAACATTTCAGCTGGTGCTATGGATGAAGATGTAACCTTACAAGCCAACATTAAACAACCCATGGTGAACATTAGGAAGGAGTCACCATTAACACTTTCAAATTCAGCTCCAGGGAGCATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAACGAGGACAGAACAGTGAACCATCATCTGCAAAACGATCAAGTGATGGGGATTTAATTGCTGTTGGGGCTGATGGTAGAGGGGGAAGAATAAAAGTTCTAAGGACTTCTAGCCAAATTCTCTCGGGTGGTAAGGAAAATTTACTAAGTTCAAAAAGGTCAAAGTTAGGAGTTAAAACAAGTGGTTTGCAATCGCAGGGGTGCCTGCAGATAGAACACTTTTTTGGGAGAGTCTCTCAGTAA 1761 0.4117 MADSGSDFAGIICSICYEPLNPINEDLQSVSICGHVFHELCLQQWFEYSSKGKKHTCPICKQGCRASDACRLYFQSVGDANNSVKPSKCFELEEDAGVLRREVKRLEVKVSGLNSQVEGQTKELEGLNEELCTCKEQAKIETALKNEALNQKASIQFQLQMKSEELEKSTLECFRLKERNMALAKELAALKLVSDLDIDEEEVLKLATLGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNILGRGEARYSKKLEKAKEKITKLKERVQELETLAESKENKYLRSLKLSKITKSSKNLEENIKSDSEVLTACKFSSKEQSKQISIPKSGIDLTANNNSKSFQSFKIENSNVTKNKTVNISNGSRSTFSLDIKREYISIDDNDSEGTNALQGCSKHNYKDQDWDDIAFSKPSLVKLEPVSGIKAETSLQGKCTLAESPRVDIDIDMANISAGAMDEDVTLQANIKQPMVNIRKESPLTLSNSAPGSICFSGGLLGPDGTHRYLGKWCKRGQNSEPSSAKRSSDGDLIAVGADGRGGRIKVLRTSSQILSGGKENLLSSKRSKLGVKTSGLQSQGCLQIEHFFGRVSQ* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0261 586 SUPERFAMILY RING/U-box 11 64 - -
Gso16g0261 586 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 585 - -
Gso16g0261 586 Coils Coil 89 130 - -
Gso16g0261 586 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 585 - -
Gso16g0261 586 CDD RING-H2 13 61 - -
Gso16g0261 586 Pfam Ring finger domain 13 61 IPR001841 -
Gso16g0261 586 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Gso16g0261 586 SMART ring_2 13 60 IPR001841 -
Gso16g0261 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 63 IPR013083 -
Gso16g0261 586 Coils Coil 247 281 - -
Gso16g0261 586 SMART ringv_2 12 61 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0261 439 586 C3H Transcription Factor Family AT4G01270 39.873 2.65e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0261 K11985 - gmx:100812811 1121.69