Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0260 ATGGAAGCCGATTGGGATCTCCACGCCGTCGTCAGAGGCTGCACCACCACCACTTCCTCCGCCGCCACAACCACCACTTACTCCTCCTCTGTTTCTTCCTCTGGCTTTGGTGCTTGTAACCCACCTTCAACTTCAAGCAGTTTTTTCTCTGTTTACAACCCTGCTGAACAAGGAGGCCATGTTTTGTCTCTTTCAGAGAACCCCTTTGAAGCAAGGAGTTCCAATTCCATTGAAGGGCTTCACGAGCTTTGCAAGCCTTTCTTCCTCAAACCACAGCCTCAGACTCTTCAAACCTCTTCTCCACTCTCTTCCTTTTCTTATTCTTCCACACCCAAATCACCTCACAAACAGCAAGAACAAAAGCAGTCTCAGCCTCAGTTTCACCATGCCGGTTCTGCCACCACGCCACGATCCAAAAGAAGGAAGAATCAGCTTAAGAAGGTTTGTCAAGTGGCAGCTGAAAATCTCTCATCAGACATATGGGCTTGGAGGAAATATGGCCAGAAACCCATCAAAGGCTCACCATATCCAAGGGGATACTACAGATGTAGCAGCTCAAAAGGGTGTTTAGCTAGGAAACAAGTGGAGAGGAACAGATCCGACCCAGCAATGTTCATAGTCACATACACTGGTGAACACAACCACCCTGCTCCTACTCATAAAAACTCTCTTGCCGGCTCCACGCGCCACAAACCTCAAACTGCCACTGCCGAAGACGCCGCCACCATAAAACCGGCTTCTCCTTCCACCTCAGGGATGGAAGAAGAGGTGGCACAGCACAGTGCAAAGTCAGAGAGCACAGAAGAAGAAGACATGGAAGATCTCATGAAAAATGATGAGGAATTACCAAACGAATTTGGCTTAACAGAAACGGTGGTATCAGATGATTTCTTTGAAGGATTAGAGGAACTGACAGGGTCTGCCACTGACCCGTTTACAGCCATTAGTAGCAACATTGATCGGTGGCCACTGGCCAATAATTCTGCCACTGCCGCTGGTGGTAGCTGA 1008 0.4871 MEADWDLHAVVRGCTTTTSSAATTTTYSSSVSSSGFGACNPPSTSSSFFSVYNPAEQGGHVLSLSENPFEARSSNSIEGLHELCKPFFLKPQPQTLQTSSPLSSFSYSSTPKSPHKQQEQKQSQPQFHHAGSATTPRSKRRKNQLKKVCQVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPAMFIVTYTGEHNHPAPTHKNSLAGSTRHKPQTATAEDAATIKPASPSTSGMEEEVAQHSAKSESTEEEDMEDLMKNDEELPNEFGLTETVVSDDFFEGLEELTGSATDPFTAISSNIDRWPLANNSATAAGGS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0260 335 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g0260 335 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g0260 335 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 334 - -
Gso16g0260 335 MobiDBLite consensus disorder prediction 212 275 - -
Gso16g0260 335 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 334 IPR044810 GO:0003700
Gso16g0260 335 MobiDBLite consensus disorder prediction 94 146 - -
Gso16g0260 335 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g0260 335 MobiDBLite consensus disorder prediction 94 133 - -
Gso16g0260 335 MobiDBLite consensus disorder prediction 215 235 - -
Gso16g0260 335 SUPERFAMILY WRKY DNA-binding domain 153 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g0260 335 MobiDBLite consensus disorder prediction 243 257 - -
Gso16g0260 335 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0260 Gso-Chr16 2970159 2972172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0260 1 334 WRKY Transcription Factor Family AT4G01250 48.148 6.64e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso16g0260 WRKY 6.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0260 K13425 - gmx:100815829 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1927 18 51669229 51671455 Gso16g0260 16 2970159 2972172 PCT
Gso9g2100 9 45276056 45278277 Gso16g0260 16 2970159 2972172 PCT
Gso16g0260 16 2970159 2972172 Gso18g1927 18 51669229 51671455 PCT
Gso16g0260 16 2970159 2972172 Gso9g2100 9 45276056 45278277 PCT